Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00799 ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGAAGAGTTTTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTGACTCTGCCTGCTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGGGATGGTATGAAGCAGAAGGATTGGCTTTCACTAGTGGCTGTGCACAGCGATTGTTGGTTGCTCTCTGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAGAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGACAGTGGAAGCAAATCTAGGAACACCACCAAGAGATCAATCGATGGACAGGCGAGAAGCAGCAATTCTAAGCTAATCGACGAAAGTTATGGAGAAGACGAAGACGAGCACAGTGACACTCTTTGTGGGAGCTGTGGTGGTAATTACAGCGGGGACGAGTTTTGGATCGGGTGCGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGATAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCTTAG 726 47.25 MASISSSPRSVEDIFKDYCARHSGLVRALTYDVEEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKQKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSRNTTKRSIDGQARSSNSKLIDESYGEDEDEHSDTLCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKADSIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30718106 30721444 + BLOR19851 Blo13g00799 69194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00799 241 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Blo13g00799 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 236 IPR013083 -
Blo13g00799 241 Pfam PHD-finger 188 236 IPR019787 -
Blo13g00799 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Blo13g00799 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Blo13g00799 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Blo13g00799 241 SMART PHD_3 187 235 IPR001965 -
Blo13g00799 241 MobiDBLite consensus disorder prediction 142 183 - -
Blo13g00799 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Blo13g00799 241 CDD PHD_AL_plant 187 237 IPR044104 -
Blo13g00799 241 MobiDBLite consensus disorder prediction 149 171 - -
Blo13g00799 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo04g00232 Blo13g00799 CCT
Blo04g00232 Blo13g00799 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00799 Blo-Chr13:30718106 Blo17g00276 Blo-Chr17:2903439 9.07E-91 dispersed
Blo01g01060 Blo-Chr1:35696223 Blo13g00799 Blo-Chr13:30718106 5.79E-111 wgd
Blo12g00390 Blo-Chr12:20605029 Blo13g00799 Blo-Chr13:30718106 5.72E-130 wgd
Blo13g00799 Blo-Chr13:30718106 Blo04g00232 Blo-Chr4:1814038 3.28E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13173 PF12165 Alfin 8.70E-68 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00799 - - qsu:112011947 448.743