Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00821 ATGTCCTCCGACGATATGAATGCCCTCAACTCCCAGCTACTATTCCAAGACGAAACTTTGCGATTTAATTGCGCCACCCCTCAGCGCCGAGTTGGGGAACCGGGTCCCAAAACTCGCGAGCTTAGCGGTTGGCTAGAGGATAAGCTCTTCTCAGTTGACCGTACTCGCTCCTTCACTCCCCAGGGACAGGATTTCCGACGGCCGATGTACGGTGACGCCTCGGAGAGAACAGAGAGTCGAAATTGGAATGGAAATGGTAGTACTGCGACGGCCAGCGGCAAATCCTCCGATGATGACGATGGTGAAGAGGAGGGCGAAGATGACGAAGTCGACGATGACGGCGTAGGTGATGCGGAGGATCTTGTTGCTGATATTATTGGCCGTAAGAGCAATTGTAATGTTAACATAGACGCAAACAATCAAAGTGGTGGGAGCGGACTAACCGGCGGAAAGGAAATCGGGAACGGAAAACCAAAGCAACACTCTCCTTTTGACGGACTGAGCAAGGATGGTGCGGTTTGCCAGTCAGGAAATCACGCCAGAGCAAGTCCGACTGAGAACAACCAGCTTGGAAGACTTGGGAACTACTCCAATGCAGTAACTATCGCAGAGTCCGATAATGACATGTATTATTCACAGTTTCTGCCGGGAGCTGTATCATCTTCTTCTGGGATGAAGGATTTGGGCGTGGAAAATGGCTGTGGGTTTAGTAGGAGAAAGGATGTCTCCTTCAATGGTGATTCTGGGGAGTCTTTGAGAGCGATCCTTTCGGATCCTGTGACGGGTGCTCTTATGGACGATGCAATAATATTACCTTGTGGGCATTCATTTGGAAGTGGCGGCATACAACACGTGACTAGAATTAAAGCTTGCTACGTATGTCATGTGTCCGTGTCAGAAGACTCGATTGCTCCAAATCTCTCTCTTCGAGCTGCTGTCCAGGCCTTCCGCCGAGAAGAAGAGTTACAGCTGTGTCCTTCACAAAAAAGGAGAAGGGAGCGATTTGAGCAGGATAAAAATGGTTATGGCGATCTAACTCTCATGGACCAACCTAGGGGAAGAGGTGTGCAGTTTCCGTTTTCAGTGACTGACCGAGTTATTATAAAGGGAAACAAGCGAACACCACAGCGTTTTGTCGGTCGAGAGGCCATCGTGACAACACAATGCTTGAATGGATGGTACGTGGTGAAGACACTGGACAATGCGGAGAGTGTGAAGCTGCAGTATCGCTCGCTAGCCAGGGCTGGAGGCGATACGCCGTCAAGGACGCACTCCGGCAAGATCTCTCCAAACTGGCTTTAG 1302 50.31 MSSDDMNALNSQLLFQDETLRFNCATPQRRVGEPGPKTRELSGWLEDKLFSVDRTRSFTPQGQDFRRPMYGDASERTESRNWNGNGSTATASGKSSDDDDGEEEGEDDEVDDDGVGDAEDLVADIIGRKSNCNVNIDANNQSGGSGLTGGKEIGNGKPKQHSPFDGLSKDGAVCQSGNHARASPTENNQLGRLGNYSNAVTIAESDNDMYYSQFLPGAVSSSSGMKDLGVENGCGFSRRKDVSFNGDSGESLRAILSDPVTGALMDDAIILPCGHSFGSGGIQHVTRIKACYVCHVSVSEDSIAPNLSLRAAVQAFRREEELQLCPSQKRRRERFEQDKNGYGDLTLMDQPRGRGVQFPFSVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLARAGGDTPSRTHSGKISPNWL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 30942572 30947094 - BLOR19873 Blo13g00821 69216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00821 433 MobiDBLite consensus disorder prediction 133 163 - -
Blo13g00821 433 MobiDBLite consensus disorder prediction 97 116 - -
Blo13g00821 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 74 433 - -
Blo13g00821 433 SUPERFAMILY RING/U-box 252 324 - -
Blo13g00821 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 74 433 - -
Blo13g00821 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Blo13g00821 433 MobiDBLite consensus disorder prediction 53 116 - -
Blo13g00821 433 MobiDBLite consensus disorder prediction 76 94 - -
Blo13g00821 433 MobiDBLite consensus disorder prediction 133 148 - -
Blo13g00821 433 MobiDBLite consensus disorder prediction 414 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00821 - - - mcha:111015962 536.569
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo16g00977 CCT 9 736 Plant U-box Gene Family AT5G57035 51.4 8.8e-213 737.3
Blo13g00821 . 199 433 Plant U-box Gene Family AT5G05230 56.5 8.8e-67 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40