Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00846 ATGGGCGCTTATAAACAAGAGCTGAAAGTAAATTTGGTGCCTTTCGATTCTTCGAGGAAGAGGAAATCACGGGGAAGACGAGATGGATCTACTGTAGCTGATACTTTAGCAAAGTGGAAGACTTATAATAAGAGTTTAGATGCTTGTGACATTAAGGGTGAACCAATGGGGAGAACTCCAGCAAAAGGATCAAAGAAAGGATGTATGAAAGGAAAGGGAGGGCCTGAAAATTCACGGTGTAATTACAGAGGAGTGAGGCAGAGGACTTGGGGCAAGTGGGTTGCTGAAATACGGCAACCTAACCGATGTAGCAGGCTCTGGCTAGGAACTTTTCCAACTGCTATGGATGCTGCACTGGCCTATGACGAAGCTGCGAGGGCCATGTATGGTCAGAATGCACGCCTTAACTTTCCCAATGTGAGAAAACAAATTCAAGTTAATGGAGATTCGGGAGTGAATTATTTAGGTTCGGCAGAGATGGATTCTTCATCAGCAGCCACTTCGGCGGGTTCTTATTCCGCTTCATCTTCTATCAGCTCTGTGATTGTGAAGAATGAGAATGGAGATCATGAAACTGACGTTCTCTCATCAAGTGGAGTCTTAAAGCAAGAAAATAAGGAACTTGTGAACAGTGAAGATCACAATCTCATTATTACAACCGGTATTTCTGCGGAACCTAGGAGTGATGCTTCTTATCCGTCATTTGGCGACAATTCCGAAGGATTGGACGTACTGTGGGATGACTTGGACAAATTTCCTATGTTGTTCGATGTGGAAGAATTAAAAGAGCTCATAGACAGTGATCCACTTTGTGAGCCAAACCTGATGGAAGATTTAAACGGCAGTGATAGTAATTTGAAACTCCTTGAAGGCGATGATCTTCATCTTGACAAACCAGCAAATTTATCCTATCAACTGCAAAATCCAGATGCAAAGTTGCTTGGAAGTTTGAATCACATGGAGCAGGCAGGTTTGGAGGCGGATTACGATAATTTCTTGAAGCCAGAAAACGAAGAAGGCAGCATGAACAATCTTGATGAATGGCCTGGGTACATTGATTTGGGATTACTTGATTTGGGTTGTGAAGATTTACAGTGA 1098 42.9 MGAYKQELKVNLVPFDSSRKRKSRGRRDGSTVADTLAKWKTYNKSLDACDIKGEPMGRTPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIRQPNRCSRLWLGTFPTAMDAALAYDEAARAMYGQNARLNFPNVRKQIQVNGDSGVNYLGSAEMDSSSAATSAGSYSASSSISSVIVKNENGDHETDVLSSSGVLKQENKELVNSEDHNLIITTGISAEPRSDASYPSFGDNSEGLDVLWDDLDKFPMLFDVEELKELIDSDPLCEPNLMEDLNGSDSNLKLLEGDDLHLDKPANLSYQLQNPDAKLLGSLNHMEQAGLEADYDNFLKPENEEGSMNNLDEWPGYIDLGLLDLGCEDLQ 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31104339 31105436 + BLOR19898 Blo13g00846 69241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00846 365 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 340 - -
Blo13g00846 365 MobiDBLite consensus disorder prediction 53 76 - -
Blo13g00846 365 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Blo13g00846 365 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Blo13g00846 365 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Blo13g00846 365 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 340 - -
Blo13g00846 365 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Blo13g00846 365 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Blo13g00846 365 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677
Blo13g00846 365 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Blo13g00846 365 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00806 Blo13g00846 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00846 Blo-Chr13:31104339 Blo17g00769 Blo-Chr17:24518640 1.93E-29 dispersed
Blo13g00846 Blo-Chr13:31104339 Blo17g00693 Blo-Chr17:18708676 8.52E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13180 PF00847 AP2 2.10E-13 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00846 - K09286 mcha:111006753 266.159