Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00886 ATGAAGGTGGCCGTTGTCTCACGCAGTGGTAAAGAAGTTGTCAAGGGTGGCCTTGAGCTCAGCGATTCCGCTACAGTGGCAGATCTGCAGGAGGCCATTCATAAGCGAATCAAGAAGTTCTACCCTTCAAGGCAGCGACTTACCCTCCCATTCCAACCGGGGTCAAAAGACAGGCCTATTGTTCTGAACTACAAGAAAGCCCTCAAAGAGTACTGTAGCAACGACTCGGAAAGCATAACTGTTGTTTTGAAGGATTTAGGCCCTCAAGTTTCGTATCGAACGCTTTTCTTCTGGGAGTACTTGGGTCCATTGATCCTCTACCCCATTTTTTACTACTTTCCGGTCTACCAGTTTTTCGGTTACACCGCAGAACGGGTCATTTATCCGGTCCAAACATATGCATTGTACTACTGGTGTTTCCACTATTTCAAACGAATTATGGAAACCTTTTTCATCCATCGATTCAGCCATGCAACCTCGCCACTTGCCAATGTGTTTAGAAACTGTGCTTATTATTGGAGCTTTGGTTCTTATATTGCATATTATGTGAATCACCCTCTTTACACCCCTGTTAGTGACCATCAAATGAAGATTGGCTTTGGGTTTGGCTTAGTTTGTCAAGTTGCAAACTTTTATTGCCATATTTTGTTGAGAAAACTTCGCAGCCCTGAAGGCAACGGAGGGTACCAAATCCCACGCGGGTTTCTCTTCAATATTGTCACATGTGCGAATTACACGACCGAGATATACCAATGGGTGGGATTCAACATTGCGACACAGACTATTGCCGGCTACGTATTTCTCGTGGTTGCGGCTCTCATTATGACAAACTGGGCCCTTGCCAAACACCGCCGACTCAAAAAGAAGATGGCGGATGCTGAGGACATTCAACCTCTTGTTTGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCGGGAGATGATGCTCCTCGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACTGGTGTTATGGTTGGTATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGACGACATGGAAAAGATATGGCATCACACTTTCTATAATGAGCTCCGAGTGGCCCCAGAAGAGCACCCAGTGCTCCTAACCGAGGCTCCTCTGAACCCAAAGGCCAATCGTGAGAAAATGACCCAAATTATGTTTGAAACCTTCAATACTCCTGCTATGTATGTAGCCATTCAAGCCGTTCTTTCACTGTATGCCAGTGGCCGTACAACTGGTATCGTGTTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCAATCTATGAAGGATATGCTCTTCCGCATGCCATCCTTCGTCTTGACCTGGCTGGGCGTGATCTCACTGATAACTTAATGAAAATTCTCACTGAGCGTGGGTACTCTTTTACTACCACAGCTGAGCGTGAAATCGTGAGGGATATGAAGGAAAAGTTGGCATATATTGCTCTTGACTATGAGCAGGAGATGGAAACTGCCAAGACTAGCTCATCAGTTGAGAAGAGCTATGAGTTGCCCGACGGACAGGTCATCACCATAGGTGCTGAGCGATTCCGATGCCCAGAGGTTCTTTTCCAGCCATCAATGATTGGAATGGAAGCAGCAGGCATCCATGAAACCACTTACAATTCCATCATGAAGTGTGATGTGGATATCAGGAAAGACCTTTATGGAAACATTGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAACAAGGAAATTTCCGCTCTTGCCCCGAGCAGCATGAAGATTAAGGTTGTGGCACCACCGGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCTTTGAGCACCTTCCAACAGGTTCATTTTACCTTTGTGTTTTCTCACAATTATAGAGTGGACAAGGAAGAGATAGGAATGAGCTAA 2001 45.78 MKVAVVSRSGKEVVKGGLELSDSATVADLQEAIHKRIKKFYPSRQRLTLPFQPGSKDRPIVLNYKKALKEYCSNDSESITVVLKDLGPQVSYRTLFFWEYLGPLILYPIFYYFPVYQFFGYTAERVIYPVQTYALYYWCFHYFKRIMETFFIHRFSHATSPLANVFRNCAYYWSFGSYIAYYVNHPLYTPVSDHQMKIGFGFGLVCQVANFYCHILLRKLRSPEGNGGYQIPRGFLFNIVTCANYTTEIYQWVGFNIATQTIAGYVFLVVAALIMTNWALAKHRRLKKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMNKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHFTFVFSHNYRVDKEEIGMS 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31432644 31438046 - BLOR19938 Blo13g00886 69281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00886 666 ProSitePatterns Actins and actin-related proteins signature. 395 407 IPR020902 -
Blo13g00886 666 Gene3D - 299 649 - -
Blo13g00886 666 Gene3D - 1 86 - -
Blo13g00886 666 SUPERFAMILY Actin-like ATPase domain 295 444 IPR043129 -
Blo13g00886 666 SMART actin_3 296 656 IPR004000 -
Blo13g00886 666 PANTHER ACTIN-4 290 651 - -
Blo13g00886 666 ProSitePatterns Actins signature 1. 344 354 IPR004001 -
Blo13g00886 666 PRINTS Actin signature 340 351 IPR004000 -
Blo13g00886 666 PRINTS Actin signature 317 326 IPR004000 -
Blo13g00886 666 PRINTS Actin signature 406 419 IPR004000 -
Blo13g00886 666 PRINTS Actin signature 431 450 IPR004000 -
Blo13g00886 666 PRINTS Actin signature 527 543 IPR004000 -
Blo13g00886 666 PRINTS Actin signature 352 374 IPR004000 -
Blo13g00886 666 SUPERFAMILY Actin-like ATPase domain 438 649 IPR043129 -
Blo13g00886 666 Gene3D - 429 629 - -
Blo13g00886 666 CDD Ubl_TECR_like 2 86 - -
Blo13g00886 666 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 159 290 IPR001104 GO:0006629|GO:0016627
Blo13g00886 666 Gene3D Actin; Chain A, domain 4 471 562 - -
Blo13g00886 666 CDD NBD_sugar-kinase_HSP70_actin 299 472 - -
Blo13g00886 666 Pfam Actin 294 649 IPR004000 -
Blo13g00886 666 PANTHER ACTIN 290 651 IPR004000 -
Blo13g00886 666 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 199 280 IPR001104 GO:0006629|GO:0016627
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00110 Blo-Chr4:928073 Blo13g00886 Blo-Chr13:31432644 4.04E-77 dispersed
Blo13g00886 Blo-Chr13:31432644 Blo16g00535 Blo-Chr16:22174140 0 dispersed
Blo07g01155 Blo-Chr7:31418565 Blo13g00886 Blo-Chr13:31432644 4.83E-08 transposed
Blo13g00886 Blo-Chr13:31432644 Blo13g01078 Blo-Chr13:32931045 0 wgd
Blo13g00761 Blo-Chr13:30365111 Blo13g00886 Blo-Chr13:31432644 0 wgd
Blo13g00886 Blo-Chr13:31432644 Blo14g00119 Blo-Chr14:859346 0 wgd
Blo13g00886 Blo-Chr13:31432644 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo13g00886 Blo-Chr13:31432644 Blo04g00106 Blo-Chr4:913059 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00886 K10355 - csv:101220611 709.523