Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g00897 ATGGCGTCGCTGCCTTATGCTGAGGTGGATTCGAGTTTACGAGCACTTGCTGGTCGCGCTGAAGGTTTTGGTCGTTTCGCCATTGGAGGGCTTCACGGACCTCTCTATTTTGTCAATAATTTGGCAGATGATGGCCCTGGATCACTTCGCGAAGGATGCCGCAGAAAAGAACCACTATGGATTCTTTTTGAGGTTTCAGACATAGACATTGATAGCAATCTACTTCCCATAAAATTGATTGAAACTTTTATATCATTTTTAGGTCTCAGTGTGTCATCTTACAAGACCATTGATGGTAGAGGGCAGAGAATAAAGCTCACTGGAAAGGGCCTTAGACTGAAGGAGTGTGAGCATATAATTATCTGCAACCTTGAATTTGAGGGGGGCAGAGGTCACGATGTTGATGGTATCCAAATAAAACCAAATTCTCGTCACATTTGGATTGACAGATGCAGCCTTCGTGACTATGATGATGGCTTAATCGATATCACTCGTCAAAGCACTGATATAACTGTGTCTAGATGTTATTTCTCACAACACGATAAGACCATGCTGATTGGAGCAGACGCTTCGCACGTTGGTGATAGATGCATTCGCGTGACGATTCATCATTGCTTCTTTGATGGAACGAGGCAGAGACACCCACGTGTTCGATTTGGAAAGGTTCATCTGTACAACAATTACACCAGAAACTGGGGTATATATGCTGTTTGCGCGAGCGTGGAATCCCAGTATTTGATAATTACGCATGTTGTTATTAAACTAATATACTCATCAGTATACTCTCAGTGCAACATATATGAAGCAGGACAGAAGAAGAAGACTTTTGAATTCTATACAGAGAAGGCGGCAGATAAAGAGGAAATGAAGTCTGGTTTAGTAAAATCTGAGGGAGACTTGTTTATAAATGGGGCTCAGCCATGCTCATTGATGATAGGCGTTGGAAAAGAATGCATATTTCATCCGAGTGAATTCTACCCAACTTGGACAATGGAATCAGCCTCGGATTCACTCAAATCCGTCCTCCAACTCTGCCCATTTTGCCAGAGGGTTCAGCTAACTTTGGAGGAGAAGAAAGTTCCTTATGAGCTGCTTCTCGTCAATCTCGCAGATAAACCTAAATGGTTCTTGGAGGTGAATCCAGAAGGGAAGGTGCCAGTGATTAAGCTCGATGAGAAATGGGTATCGGATTCTGATGTTATTGTTGGACTCCTGGAGGAGAAATACCCAGAACCTTCTCTCACTACTCCTCCTGAATTTGCCTCTGTGGGATCGAAGATATTTGGTGCTTTCTTTAGATTTCTTGTAAGCAAGGATCCCGAAGACGGATTGGAGCAGGCTTTACTAGATGAGGTTAAGGCATTGGATGATCATCTCAAGCAACACGGTCCGTATGTTGCCGGGGAGAAGATTACTGCAGTTGATCTGAGTTTGGCTCCTAAAATATACCATCTAGAGATTGCTCTTGGCTATTACAAGAAATGGACAGTTCCTGAAAACTTGACACATTTCCACAACTACAAACAGTTGCTCTTCTCCCGCGAATCGTTCGTGAAGACAAAGCCTGCCGAGGAGTATGTTATTGCTGGATGGGGGCCTAAGATGTCCAAGTTTCCTTTAATTGATGAATCTATACCTTAA 1641 43.21 MASLPYAEVDSSLRALAGRAEGFGRFAIGGLHGPLYFVNNLADDGPGSLREGCRRKEPLWILFEVSDIDIDSNLLPIKLIETFISFLGLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFSQHDKTMLIGADASHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQYLIITHVVIKLIYSSVYSQCNIYEAGQKKKTFEFYTEKAADKEEMKSGLVKSEGDLFINGAQPCSLMIGVGKECIFHPSEFYPTWTMESASDSLKSVLQLCPFCQRVQLTLEEKKVPYELLLVNLADKPKWFLEVNPEGKVPVIKLDEKWVSDSDVIVGLLEEKYPEPSLTTPPEFASVGSKIFGAFFRFLVSKDPEDGLEQALLDEVKALDDHLKQHGPYVAGEKITAVDLSLAPKIYHLEIALGYYKKWTVPENLTHFHNYKQLLFSRESFVKTKPAEEYVIAGWGPKMSKFPLIDESIP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 31509656 31516363 - BLOR19949 Blo13g00897 69292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g00897 546 Pfam Glutathione S-transferase, C-terminal domain 444 507 - -
Blo13g00897 546 Gene3D - 415 537 - -
Blo13g00897 546 Pfam Glutathione S-transferase, N-terminal domain 344 412 IPR004045 -
Blo13g00897 546 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 335 413 IPR004045 -
Blo13g00897 546 PANTHER PECTATE LYASE 1 354 - -
Blo13g00897 546 Pfam Pectate lyase 90 232 IPR002022 -
Blo13g00897 546 SUPERFAMILY Pectin lyase-like 17 308 IPR011050 -
Blo13g00897 546 CDD GST_C_DHAR 414 534 - -
Blo13g00897 546 SUPERFAMILY Thioredoxin-like 343 412 IPR036249 -
Blo13g00897 546 SFLD Main (cytGST) 344 509 - -
Blo13g00897 546 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 391 538 IPR010987 -
Blo13g00897 546 SUPERFAMILY GST C-terminal domain-like 408 533 IPR036282 -
Blo13g00897 546 PANTHER PECTATE LYASE 18-RELATED 1 354 IPR045032 GO:0030570
Blo13g00897 546 SFLD Glutathione Transferase (cytosolic) 344 509 IPR040079 -
Blo13g00897 546 CDD GST_N_family 345 402 - -
Blo13g00897 546 Gene3D - 6 316 IPR012334 -
Blo13g00897 546 Gene3D Glutaredoxin 330 414 - -
Blo13g00897 546 PRINTS Pollen allergen Amb family signature 213 232 IPR018082 -
Blo13g00897 546 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Blo13g00897 546 PRINTS Pollen allergen Amb family signature 134 155 IPR018082 -
Blo13g00897 546 SMART amb_all 60 273 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00897 Blo-Chr13:31509656 Blo01g01002 Blo-Chr1:29378370 1.95E-40 dispersed
Blo18g00465 Blo-Chr18:5336588 Blo13g00897 Blo-Chr13:31509656 2.65E-85 transposed
Blo12g00441 Blo-Chr12:21988055 Blo13g00897 Blo-Chr13:31509656 5.81E-164 wgd
Blo13g00751 Blo-Chr13:30279399 Blo13g00897 Blo-Chr13:31509656 1.56E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g00897 K01728 - csin:114270999 563.533