Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g01012 ATGGATCCTATTAATGGTAACAATAGTACGAGTCTCAGCAACAACTCCAATCTTGCTGCAAAGCAACGGCTTCGATGGACACATGAACTTCATGAACGTTTTGTTGATGCCGTGGCTCAGCTTGGTGGGCCAGATCGTGCCACTCCCAAAGGCGTTCTTAGAGTGATGGGTGTGCAAGGTTTAACTATATACCACGTTAAAAGTCATTTACAGAAATATCGACTTGCAAAGTACCTTCCTGATTCATCATCTGATGACAGTTATTATTTTCTGTACATTGTGCAAGGAAAAAATGCTGACAAGAAAGAATCTGGAGATTTACTTTCTAATTTGGATGGATCATCTGGAATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTTCAGAAACGACTTCATGAACAATTAGAGGCATTGTTGGTTATTTGTACGCAGGTGCAGAGACATTTACAATTGAGAATTGAAGCGCAAGGCAAGTACTTGAAGAAGATAATTGAAGAGCAACAAAGACTTACTGGGGTTCTTTCAGAAGTTCCAGCTTCTACCATGTCAGCCGCCATATCAGATGTCAAGAATGAGCCAGCAACACCAGGTGCAACCTCCGAATCTCCCCTCCAGGAAAAGGCTGCTAAGCAATGCGCTCTAGCCAAGAGCCTCTCTCTTGACGATTCTCTCTCTTCTTCTCATGAGCCACAAACTCCAGATTCTTGCTGCCACGTCAGCCATCCAGATGAGAGCCCCAAAGGCGAAAGGTCGACTAAGCAACAGGCCATTACAGGTGGAGCCTATGGAAACCCCGAAATGGTACTCACTCATCATATTCTTGAGTCAAGTGCTTCCTTCCAGCAACCTCATTCCATATTTGTGGAGACAGAAGAGGTTAATCCTTCGTCAGGAATTGTAAACAATGAAGATCTAGTTAACCCTAATTCCTGCCATCTGTAA 948 43.46 MDPINGNNSTSLSNNSNLAAKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDDSYYFLYIVQGKNADKKESGDLLSNLDGSSGMQITEALKLQMEVQKRLHEQLEALLVICTQVQRHLQLRIEAQGKYLKKIIEEQQRLTGVLSEVPASTMSAAISDVKNEPATPGATSESPLQEKAAKQCALAKSLSLDDSLSSSHEPQTPDSCCHVSHPDESPKGERSTKQQAITGGAYGNPEMVLTHHILESSASFQQPHSIFVETEEVNPSSGIVNNEDLVNPNSCHL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32463819 32465999 + BLOR20064 Blo13g01012 69407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g01012 315 Gene3D - 20 79 - -
Blo13g01012 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 14 306 - -
Blo13g01012 315 MobiDBLite consensus disorder prediction 223 256 - -
Blo13g01012 315 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Blo13g01012 315 Pfam MYB-CC type transfactor, LHEQLE motif 117 171 IPR025756 -
Blo13g01012 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Blo13g01012 315 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Blo13g01012 315 MobiDBLite consensus disorder prediction 189 208 - -
Blo13g01012 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 78 IPR017930 -
Blo13g01012 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 14 306 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g01012 - - - hbr:110654981 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g01197 Blo-Chr7:31821054 Blo13g01012 Blo-Chr13:32463819 5.64E-66 dispersed
Blo09g00342 Blo-Chr9:13843245 Blo13g01012 Blo-Chr13:32463819 2.85E-49 dispersed
Blo13g01012 Blo-Chr13:32463819 Blo02g00231 Blo-Chr2:2205649 8.52E-44 dispersed
Blo13g01012 Blo-Chr13:32463819 Blo14g00044 Blo-Chr14:272266 3.06E-34 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13202 PF14379 Myb_CC_LHEQLE 4.50E-19 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo13g01012 Blo_Chr13 FPKM 6.222305 7.742116 0.776211 1.241939 4.12285 4.649539 3.931047 11.335909 11.88791 10.239669