Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g01073 ATGGCATCCTTCGTAGCATCCCTAGCTTGCCTTATAACAGTAATGTGGGTAGCTGAAGCCAGGATTCCAGGAGTTTACAGCGGTGGAGGATGGGAAACAGCTCATGCTACCTTCTATGGAGGTTCCGACGCCTCTGGTACAATGGGAGGAGCTTGTGGGTACGGCAATCTGTACAGCCAGGGCTACGGTGTGAACACGGCAGCGCTCAGCACAGCACTGTTCAACAGCGGCCTGAGCTGTGGCGCCTGCTTCGAGATAAAGTGCGCTAACGATCGACAATGGTGCCATTCCGGAAGTCCATCCATCTACATTACGGCTACTAACTTCTGCCCACCCAACTACGCTCTTCCAAACGACCATGGCGGTTGGTGCAACCCACCTCGCCCCCACTTCGACCTTGCTATGCCTATGTTTCTCAAGATCGCCGAATACCGCGCCGGAATCGTTCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAGCAGGGTGGGATGAGATTCACGATCAACGGATTCCGGTACTTCAACTTGGTTCTGATAACGAACGTCGCCGGTGCCGGGGACCTCGTGAGGGTGAGCGTGAAGGGGACGCGGACGGGATGGATGAGCATGAGCAGAAACTGGGGTCAAAACTGGCAGTCAAACGCGGGTTTGGTCGGGCAGTCATTGTCGTTCAGGCTCTGTACTATCCCCTTGGATGTTGCCAAGGTAAGGATTCAGCTCCAGAGGAAAACAGCTGTGGGGGATGGGTTGGGTACGTCCAATTATAAGGGGTTAATGGGTACTATCATTACTATTGCTGGGGAAGAAGGTGTATTAGCATTGTGGAAGGGCATTATTCCTGGATTGCATCGCCAATGTATTTATGGAGGACTAAGGATCGGTCTGTATGATCCAGTGAAAACTTATTTAGTTGGCAATGATTTTGTTGGAGACATTCCTCTACAACACAAAATTTTAGCTGCTCTGTTTACTGGGGCTCTTGCAATTGCAGTGGCCAATCCGACTGACCTTGTCAAAGTTCGACTTCAGGCCGAAGGAACACTACCAGCTGGAGTACCTAGGCGTTATTCCAGCGCCCTAAATGCTTATGCCACTATAGTAAAGCAGGAAGGATTGGGGGCTCTGTGGACTGGCCTGGGGCCAAACATAACGCGAAATGCTATTATTAATGCTGCTGAATTAGCAAGTTATGATCACGTGAAACAGACGATTTTGAAAATTCCAGGATTCGGGGAGGGCATCTTCACTCATCTTCTAGCTGGTCTAGGTGCAGGATTCTTTGCTGTTTCCATTGGTTCTCCTGCTGATGTGGTTAAATCAAGAATGATGGGAGATTCGAGCTATAAAAATACACTGGACTGCTTTGTCAAAACCTTGAAGAAGGAGGGAATTCTGGCCTTCTACAAAGGGTTCCTCGCAAATTTTAGTCGGCTAGGATCCTGGAACGTGATAATACCAGAAGATTCTTCGGAGTCTAACAGAGTTTTTGAGGAGTTCTACTGCGAGACATTCGCCATTGATGCTTCTTCGAGGAGGAATTCTGTATTGTATTTATACTCTGTTCTTAATTTTTCATTCTTATTGACTTCGTATAAATATTGA 1602 48.69 MASFVASLACLITVMWVAEARIPGVYSGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIYITATNFCPPNYALPNDHGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDLVRVSVKGTRTGWMSMSRNWGQNWQSNAGLVGQSLSFRLCTIPLDVAKVRIQLQRKTAVGDGLGTSNYKGLMGTIITIAGEEGVLALWKGIIPGLHRQCIYGGLRIGLYDPVKTYLVGNDFVGDIPLQHKILAALFTGALAIAVANPTDLVKVRLQAEGTLPAGVPRRYSSALNAYATIVKQEGLGALWTGLGPNITRNAIINAAELASYDHVKQTILKIPGFGEGIFTHLLAGLGAGFFAVSIGSPADVVKSRMMGDSSYKNTLDCFVKTLKKEGILAFYKGFLANFSRLGSWNVIIPEDSSESNRVFEEFYCETFAIDASSRRNSVLYLYSVLNFSFLLTSYKY 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32906708 32911580 + BLOR20125 Blo13g01073 69468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g01073 533 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Blo13g01073 533 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 302 IPR018108 -
Blo13g01073 533 Gene3D Mitochondrial carrier domain 215 486 IPR023395 -
Blo13g01073 533 ProSiteProfiles Solute carrier (Solcar) repeat profile. 412 495 IPR018108 -
Blo13g01073 533 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 225 485 - -
Blo13g01073 533 SUPERFAMILY Mitochondrial carrier 224 484 IPR023395 -
Blo13g01073 533 SMART dpbb_1 66 153 IPR007112 -
Blo13g01073 533 Pfam Lytic transglycolase 66 153 IPR009009 -
Blo13g01073 533 ProSiteProfiles Solute carrier (Solcar) repeat profile. 316 403 IPR018108 -
Blo13g01073 533 Pfam Mitochondrial carrier protein 311 406 IPR018108 -
Blo13g01073 533 Pfam Mitochondrial carrier protein 225 305 IPR018108 -
Blo13g01073 533 Pfam Mitochondrial carrier protein 413 480 IPR018108 -
Blo13g01073 533 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Blo13g01073 533 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Blo13g01073 533 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 1 225 485 - -
Blo13g01073 533 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 228 IPR007117 -
Blo13g01073 533 Gene3D - 17 159 IPR036908 -
Blo13g01073 533 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Blo13g01073 533 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Blo13g01073 533 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Blo13g01073 533 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Blo13g01073 533 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Blo13g01073 533 Pfam Expansin C-terminal domain 164 228 IPR007117 -
Blo13g01073 533 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00154 Blo-Chr8:1596886 Blo13g01073 Blo-Chr13:32906708 9.57E-37 dispersed
Blo13g00766 Blo-Chr13:30398246 Blo13g01073 Blo-Chr13:32906708 3.68E-138 dispersed
Blo13g01073 Blo-Chr13:32906708 Blo14g00114 Blo-Chr14:820763 2.48E-124 dispersed
Blo17g00093 Blo-Chr17:724446 Blo13g01073 Blo-Chr13:32906708 5.06E-50 dispersed
Blo06g00477 Blo-Chr6:26225800 Blo13g01073 Blo-Chr13:32906708 6.36E-09 transposed
Blo07g01157 Blo-Chr7:31424320 Blo13g01073 Blo-Chr13:32906708 5.45E-12 transposed
Blo11g00784 Blo-Chr11:11746904 Blo13g01073 Blo-Chr13:32906708 2.94E-10 transposed
Blo11g00849 Blo-Chr11:15087568 Blo13g01073 Blo-Chr13:32906708 3.58E-07 transposed
Blo01g01112 Blo-Chr1:39657479 Blo13g01073 Blo-Chr13:32906708 1.78E-138 wgd
Blo12g00426 Blo-Chr12:21683742 Blo13g01073 Blo-Chr13:32906708 3.41E-112 wgd
Blo13g00884 Blo-Chr13:31385612 Blo13g01073 Blo-Chr13:32906708 1.44E-134 wgd
Blo13g01073 Blo-Chr13:32906708 Blo07g01176 Blo-Chr7:31647090 3.48E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g01073 - K15103 cit:102627988 433.335