Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo13g01078 ATGGGTCAAGGATTGAGCTGCCGAGAGGACTATGAGCATGCGCTATTCGGAGCTATAAAGCTGGGAGACTTGGCGACAGTTGAAGCTCTGTTGGAGAGAGAGCCGTCTCTGTTGACCCGGACCACCGGCTATGATTGCCAGACTGCGCTTCATGTCGCCGCTGCCAATGGCCAGATAGAGATCCTCTCAATGCTTTTGGAACGATTTATGAACCCGGATTTGCTAAATCGACACAAACAGACTCCGCTGATGTTGGCTGCAATGGACGGAAGGATCTCTTGCGTTCTGAAGCTGCTCGAACGAGGAGCAAATATTTTGATGTTTGATTCCCTTCGCCGACGAACTTGCCTGCATTATGCTGTTTACTATGGCCATTCCGAATGTTTGAAAGCTATTCTCTCCGCGGCAAGTTCAAGCTCTGTTGCTTCTTCCTGGTATACTCCATCTCCATATCTGGATTCATTTCTCTGCTATAATATCAACTGTGTTTGGCAATTCAATCATAGGGGATTTGCCAGATTCGTGAATGTTAAAGACGGCAGAGGAGCAACGCCATTGCACTTGGCATCCCGCCAAAGGCGGCCTGAATGTGTACATATTCTCCTGGATAATGGAGCTTTGGTTTGTGCTTCAACCGGTGGATCTGGATCCCCAGGGAGCACACCTCTCCATTTAGCGGCCAGAGGGGGATCTTCCGATTGCATCCGAGAATTGTTGGCTTGGGGCGCAGACCGTCTGCAAAGAGATTCATCTGGGAGAATTCCTTATGCAGTCGCTTTGAGGCATAAACACGGAACCTGCGCCGCTCTACTAAATCCTTCATCAGCCGAGCCTATTGTCTGGCCGTCAGCTTTGAAGTTCATCGCCGAGCTTAATCTGGACGCGAAAGTTCTGTTAGAGAACGCCTTAATGAAGGCAAACAAGGAGATAGAGAAGAAAATATTGAAGAAATCGGATTGTTACCTTCAGGCTCCTTCGCATTCCGGTGAAAGGCCAGATGATGACATCTCTGAGCCATTTCTCTTTCCAAAAACTCTTGATTTTCTAACAATTTGCAAAAGTAATTTGTGGGGAGTTGTTTATGCTGGTTTTGCTGGAGATGACGCTCCAAGGGCTGTGTTCCCCAGTATTGTGGGTCGTCCAAGGCACACAGGGGTGATGGTCGGTATGGGCCAAAAAGATGCATACGTTGGTGATGAAGCTCAATCCAAACGTGGTATACTAACATTGAAATACCCCATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAAATTTGGCATCACACCTTTTACAATGAGCTCAGAGTGGCTCCTGAAGAACATCCTGTTCTGCTCACTGAAGCACCTCTAAACCCAAAGGCCAATCGTGAAAAGATGACCCAAATCATGTTCGAGACGTTCAACACTCCAGCAATGTACGTGGCAATCCAGGCAGTTCTCTCCCTCTATGCCAGTGGACGCACAACTGGTATTGTTTTGGACTCTGGAGATGGTGTCAGCCATACAGTCCCCATTTATGAGGGATATGCCCTTCCCCATGCCATTCTTCGTCTTGACCTGGCAGGGCGCGACCTCACCGATGCCCTGATGAAAATCCTTACTGAACGTGGCTATTCCTTCACCACCACAGCCGAGCGTGAAATTGTTAGGGACATGAAGGAGAAGCTCGCATATATTGCTCTTGACTACGAGCAGGAACTTGAAACTTCCAAGTCTAGCTCTTCTGTTGAGAAGACCTACGAGCTACCCGACGGACAGGTCATCACAATTGGGGCTGAGCGTTTCCGATGTCCAGAGGTTCTTTTCCAGCCTTCCATGATTGGGATGGAGGCTGCTGGCATTCATGAAACTACATATAATTCCATCATGAAGTGTGACGTTGATATCAGGAAGGATTTGTATGGAAACATCGTTCTTAGTGGCGGCTCCACAATGTTCCCCGGTATTGCTGACAGAATGAGCAAGGAAATAACCGCTCTAGCCCCGAGCAGTATGAAAATCAAGGTCGTGGCTCCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCTTCTCTTAGCACTTTTCAACAGATGTGGATCGCAAAGGCTGAGTACGACGAATCCGGCCCGTCGATCGTGCACAGAAAATGCTTCTGA 2157 48.31 MGQGLSCREDYEHALFGAIKLGDLATVEALLEREPSLLTRTTGYDCQTALHVAAANGQIEILSMLLERFMNPDLLNRHKQTPLMLAAMDGRISCVLKLLERGANILMFDSLRRRTCLHYAVYYGHSECLKAILSAASSSSVASSWYTPSPYLDSFLCYNINCVWQFNHRGFARFVNVKDGRGATPLHLASRQRRPECVHILLDNGALVCASTGGSGSPGSTPLHLAARGGSSDCIRELLAWGADRLQRDSSGRIPYAVALRHKHGTCAALLNPSSAEPIVWPSALKFIAELNLDAKVLLENALMKANKEIEKKILKKSDCYLQAPSHSGERPDDDISEPFLFPKTLDFLTICKSNLWGVVYAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKSSSSVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 32931045 32938943 - BLOR20130 Blo13g01078 69473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo13g01078 718 Pfam Actin 360 718 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 392 403 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 404 426 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 483 502 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 579 595 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 458 471 IPR004000 -
Blo13g01078 718 PRINTS Actin signature 369 378 IPR004000 -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
Blo13g01078 718 Gene3D - 6 155 IPR036770 -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat region circular profile. 218 244 - -
Blo13g01078 718 PANTHER ACTIN-97 352 717 - -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Blo13g01078 718 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Blo13g01078 718 CDD NBD_sugar-kinase_HSP70_actin 417 524 - -
Blo13g01078 718 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Blo13g01078 718 ProSiteProfiles Ankyrin repeat region circular profile. 181 206 - -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Blo13g01078 718 PANTHER ACTIN 352 717 IPR004000 -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Blo13g01078 718 Pfam Ankyrin repeats (many copies) 219 259 IPR002110 GO:0005515
Blo13g01078 718 SUPERFAMILY Actin-like ATPase domain 360 496 IPR043129 -
Blo13g01078 718 Gene3D - 158 335 IPR036770 -
Blo13g01078 718 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Blo13g01078 718 Gene3D - 481 681 - -
Blo13g01078 718 Gene3D Actin; Chain A, domain 4 523 614 - -
Blo13g01078 718 SMART actin_3 358 718 IPR004000 -
Blo13g01078 718 SMART ANK_2a 218 247 IPR002110 GO:0005515
Blo13g01078 718 SMART ANK_2a 45 74 IPR002110 GO:0005515
Blo13g01078 718 SMART ANK_2a 78 107 IPR002110 GO:0005515
Blo13g01078 718 SMART ANK_2a 181 210 IPR002110 GO:0005515
Blo13g01078 718 SMART ANK_2a 10 39 IPR002110 GO:0005515
Blo13g01078 718 SMART ANK_2a 112 141 IPR002110 GO:0005515
Blo13g01078 718 ProSitePatterns Actins signature 1. 396 406 IPR004001 -
Blo13g01078 718 SUPERFAMILY Actin-like ATPase domain 490 718 IPR043129 -
Blo13g01078 718 ProSitePatterns Actins signature 2. 699 707 IPR004001 -
Blo13g01078 718 Gene3D - 360 712 - -
Blo13g01078 718 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Blo13g01078 718 Pfam Ankyrin repeat 182 209 IPR002110 GO:0005515
Blo13g01078 718 ProSitePatterns Actins and actin-related proteins signature. 447 459 IPR020902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g01078 Blo14g00119 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g01078 Blo-Chr13:32931045 Blo16g00535 Blo-Chr16:22174140 0 dispersed
Blo14g00120 Blo-Chr14:874665 Blo13g01078 Blo-Chr13:32931045 3.47E-140 dispersed
Blo16g00926 Blo-Chr16:37202563 Blo13g01078 Blo-Chr13:32931045 4.08E-21 dispersed
Blo01g01117 Blo-Chr1:40085271 Blo13g01078 Blo-Chr13:32931045 5.72E-111 wgd
Blo13g00886 Blo-Chr13:31432644 Blo13g01078 Blo-Chr13:32931045 0 wgd
Blo13g01078 Blo-Chr13:32931045 Blo14g00119 Blo-Chr14:859346 0 wgd
Blo13g01078 Blo-Chr13:32931045 Blo04g00277 Blo-Chr4:2106707 0 wgd
Blo13g01078 Blo-Chr13:32931045 Blo04g00108 Blo-Chr4:922039 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo13g01078 K10355 - fve:101313911 707.597