Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo14g00017 ATGGAGGCTGGGGCTAATGGCACAACCGGTTTGATGGATTTTGGAGAAAACAGTGCCGGGCTTCGTTCAATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCACCCTAACTCGGACGCAGACAATGGCGATTCCTTTCTCTCTCTGCCTTCCTCAACCACCAACAAGGCCGACCCAAATCGTAATAGTAACAGCGGCTGTTCTCTCATGGTCGACGACCGGCAGAACAGTGTTTGGTGTTATTTCATGGACAACCACAATAATAGTGAAAACAACTCTTTCTCGGCGCTCAAGGCTAAGATCATGGCTCATCCTCACTACCATCGTCTCTTAGCTGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGGTTCTAAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATCTGCCCCGCCGGCACAGGATGTCTTGGGGATGATCCGGCACTGGACCAATTCATGGAAGCCTACTGTGAGATGCTGATAAAATACGAGCAAGAGCTCGCAAAGCCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAAATAGAGTGCCAGTTCAAAGACCTAATTGTTTCTTCAGATACTGGTTGTGAGGAAGGTGAAAGGAATGGATCATCATCAGAAGAAGTCGATATAATGAACCAGTGCATTGATCCCCATGCAGAAGATGGGGAACTGAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTGAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAGGAAGCCAGGCAACAGTTACTGGATTGGTGGACTCGACATTACAAGTGGCCTTACCCTTCGGAGGCGCAGAAGGTGGCCCTTGCCGAATCAACAGGGTTGGATCAGAAGCAGATAAACAACTGGTTTATAAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTCGTGGTGATGGATGCGACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTGGCGAATCCTTTTCCCTTGGGCGTCGCGCCCACCTTGCTCTGA 1056 49.05 MEAGANGTTGLMDFGENSAGLRSMMTMMHGMSSHHPHPNSDADNGDSFLSLPSSTTNKADPNRNSNSGCSLMVDDRQNSVWCYFMDNHNNSENNSFSALKAKIMAHPHYHRLLAAYLNCQKVGAPPEVVLKLEEACASAASICPAGTGCLGDDPALDQFMEAYCEMLIKYEQELAKPFKEAMLFLQKIECQFKDLIVSSDTGCEEGERNGSSSEEVDIMNQCIDPHAEDGELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWTRHYKWPYPSEAQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVLANPFPLGVAPTLL 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 130271 132299 - BLOR14335 Blo14g00017 69530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo14g00017 351 CDD homeodomain 263 315 IPR001356 GO:0003677
Blo14g00017 351 ProSiteProfiles 'Homeobox' domain profile. 251 314 IPR001356 GO:0003677
Blo14g00017 351 Pfam Homeobox KN domain 271 310 IPR008422 GO:0003677|GO:0006355
Blo14g00017 351 ProSiteProfiles ELK domain profile. 231 251 IPR005539 GO:0003677
Blo14g00017 351 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Blo14g00017 351 Pfam KNOX1 domain 98 137 IPR005540 GO:0003677|GO:0005634
Blo14g00017 351 MobiDBLite consensus disorder prediction 43 69 - -
Blo14g00017 351 SUPERFAMILY Homeodomain-like 253 328 IPR009057 -
Blo14g00017 351 MobiDBLite consensus disorder prediction 29 69 - -
Blo14g00017 351 ProSitePatterns 'Homeobox' domain signature. 289 312 IPR017970 GO:0000981|GO:0006355
Blo14g00017 351 Pfam ELK domain 231 252 IPR005539 GO:0003677
Blo14g00017 351 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 340 - -
Blo14g00017 351 SMART KNOX2_2 146 197 IPR005541 GO:0003677|GO:0005634
Blo14g00017 351 PANTHER - 5 340 - -
Blo14g00017 351 Gene3D - 256 318 - -
Blo14g00017 351 SMART ELK_2 231 252 IPR005539 GO:0003677
Blo14g00017 351 SMART HOX_1 253 318 IPR001356 GO:0003677
Blo14g00017 351 Pfam KNOX2 domain 150 195 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00017 Blo-Chr14:130271 Blo16g01165 Blo-Chr16:40199397 7.36E-60 dispersed
Blo13g00994 Blo-Chr13:32344218 Blo14g00017 Blo-Chr14:130271 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13218 PF03791 KNOX2 3.20E-20 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo14g00017 - - rcu:8277968 495.738