Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo14g00448 ATGTATTATGATTTGCCTCCTGAATTTCATCCTTTTGCTCTAAAGCATTTTGTGAATGACGGTTCAAACAATGCATCTTTGTCAGGCTATAATTCTGCTGATAGAAGTGTTACCAAACTATCAAGTTTAAGCTTTCCTGACTCTTTTTTATTAAAACATAATAGTGAAACTGATGACCAGCAAAAACTCTCTGAATCTGAGAACCGGTCTTCATCTCCTCTGACTGGACTGTCTCATCATGGTATTTCAAATCCAACTCAGTATACAATGCCGTCGCAACTTGGAGTGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAACCATATCCTCCTCGGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGGCGTCAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCTTTGAAGTCTAGGAAGCCATATTTGCACGAATCCCGTCATTTACATGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCGAAGAAAAATGAAAACCAATCAAATGAGGCGATGTCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCGTCCTAA 753 41.97 MYYDLPPEFHPFALKHFVNDGSNNASLSGYNSADRSVTKLSSLSFPDSFLLKHNSETDDQQKLSESENRSSSPLTGLSHHGISNPTQYTMPSQLGVGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPRPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKAKKNENQSNEAMSGDELQTNLNLNNNKNDPASSDSAS 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5297558 5300755 + BLOR14766 Blo14g00448 69961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo14g00448 250 ProSiteProfiles NF-YA/HAP2 family profile. 154 214 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 MobiDBLite consensus disorder prediction 211 250 - -
Blo14g00448 250 MobiDBLite consensus disorder prediction 56 90 - -
Blo14g00448 250 MobiDBLite consensus disorder prediction 172 191 - -
Blo14g00448 250 PRINTS CCAAT-binding transcription factor subunit B signature 157 179 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 PRINTS CCAAT-binding transcription factor subunit B signature 188 211 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 MobiDBLite consensus disorder prediction 172 194 - -
Blo14g00448 250 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 156 211 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 MobiDBLite consensus disorder prediction 66 90 - -
Blo14g00448 250 SMART cbf3 153 214 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 ProSitePatterns NF-YA/HAP2 subunit signature. 159 179 IPR018362 GO:0003677|GO:0016602
Blo14g00448 250 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 52 234 IPR001289 GO:0003700|GO:0006355
Blo14g00448 250 MobiDBLite consensus disorder prediction 218 250 - -
Blo14g00448 250 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 52 234 - -
Blo14g00448 250 Gene3D - 154 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo14g00448 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo09g00463 Blo-Chr9:15774004 Blo14g00448 Blo-Chr14:5297558 3.92E-19 dispersed
Blo14g00284 Blo-Chr14:2845175 Blo14g00448 Blo-Chr14:5297558 4.36E-30 dispersed
Blo14g00448 Blo-Chr14:5297558 Blo16g00972 Blo-Chr16:37967267 8.77E-21 dispersed
Blo14g00448 Blo-Chr14:5297558 Blo08g00259 Blo-Chr8:3301451 4.47E-119 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g01379 BCT,CCT,ECH 16 243 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.5 3.4e-55 212.2
Blo14g00284 BCT,CCT,ECH 134 306 CCAAT-HAP2 Transcription Factor Family AT3G20910 56.6 3.6e-45 179.1
Blo03g01379 BCT,CCT,ECH 118 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.2 5.1e-44 175.3
Blo03g00980 BCT,CCT,ECH 118 248 CCAAT-HAP2 Transcription Factor Family AT3G20910 64.9 7.7e-40 161.4
Blo08g00103 BCT,CCT,ECH 110 269 CCAAT-HAP2 Transcription Factor Family AT3G20910 55.3 4.2e-38 155.6
Blo14g00448 . 105 216 CCAAT-HAP2 Transcription Factor Family AT2G34720 74.1 1.1e-40 163.3
Blo14g00448 . 51 218 CCAAT-HAP2 Transcription Factor Family AT1G30500 60.1 5.3e-47 184.5
Blo08g00259 . 10 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.5 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13260 PF02045 CBFB_NFYA 4.70E-26 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo14g00448 Blo_Chr14 FPKM 1.224053 0.98894 2.162961 1.632767 3.515866 3.627722 3.57097 2.159947 1.687904 1.989643