Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo14g00610 ATGGCTTGGCCATTCTGTGTGTCCGTCGTTTTCGCGAAAGAGAGAGGGGGGAAGGGAGATGCGGGACGGGGACCGAGCGCCGGTGAGCTCGCGGGCGAACAGCGAACGGCGATCCGGCGAGCGACGAGCGCCGGCGAGGCTTCGATGTGCGATGACGGGCTCTCACGGTTAGGGCTTGCAAATTGGCGCTCGGGATCGGAGATTCTGGCAGTGACGCATTCCGGCATCGGTTCGAGCAGACATAGATGGACAGGAAGATATGAAGCTCATTTATGGGACAAGAATTGTTGGAATGAGTCTCAGAAGAAGAAAGGAAGACAAGGTGCCTATGATGATGAAAATGCCGCAGCACATGCCTATGACCTAGCAGCTCTCAAATATTGGGGCCCTGACACCATTCTTAACTTTCCGCTACCAACGTACCAAAAAGAACTAACAGAAATGGAAGGTCGATCACGAGAAGAGTATATTGGATCATTGAGAAGAAAAAGCAGTGGTTTTTCTCGCGGAGTTTCAAAATATCGAGGTGTTGCCAGACATCATCACAATGGAAGATGGGAAGCAAGGATCGGAAGAGTTTTTGGCAACAAATATCTCTACCTTGGGACATATGCAACCCAAGAAGAAGCGGCAACAGCATATGATCTGGCAGCAATAGAGTACCGAGGACTAAACGCTGTCACCAACTTTGACCTCAGTCGCTACATCAAATGGCTGAAACCAACCAATCACGATGCCAATACCAGCTGTGACTTTAGTCAGCAAAACCCTAATTCCCCTTCTCTTATGGGAATAGACCCAACTCAGAAACATGAACTAGGGTTTTTCCGAACTCAACAAGAACTGAGTCCAGTGGATCAGAGTTCAATCGCTCACACTCGACCTTCCTCTGCAACTTCAGCTCTAGGACTTCTTTTACAGTCCACAAAGTTTAAGGAAATGATGGAGATGAGTTACATTAACGACGGTTCTTTACCTGTGCCAGCCGCGGAGGTGGAGGCTGCGCCGCTCGTTTTTCCTCGAGACTTACAGATTCCTTTTGGCTTTGAAAAGTCTCTAAGCTTTGGAGAAGAAGATGACGTTATGTTCGGTGATCTTAATTCATTTATTTCACATAATTTTAATTATGACTTTGATAACTAG 1143 47.51 MAWPFCVSVVFAKERGGKGDAGRGPSAGELAGEQRTAIRRATSAGEASMCDDGLSRLGLANWRSGSEILAVTHSGIGSSRHRWTGRYEAHLWDKNCWNESQKKKGRQGAYDDENAAAHAYDLAALKYWGPDTILNFPLPTYQKELTEMEGRSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPTNHDANTSCDFSQQNPNSPSLMGIDPTQKHELGFFRTQQELSPVDQSSIAHTRPSSATSALGLLLQSTKFKEMMEMSYINDGSLPVPAAEVEAAPLVFPRDLQIPFGFEKSLSFGEEDDVMFGDLNSFISHNFNYDFDN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10677634 10684253 + BLOR06059 Blo14g00610 70123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo14g00610 380 Pfam AP2 domain 79 129 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 Pfam AP2 domain 172 223 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 SUPERFAMILY DNA-binding domain 172 233 IPR016177 GO:0003677
Blo14g00610 380 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 76 365 - -
Blo14g00610 380 Gene3D AP2/ERF domain 172 233 IPR036955 GO:0003700|GO:0006355
Blo14g00610 380 Gene3D AP2/ERF domain 74 138 IPR036955 GO:0003700|GO:0006355
Blo14g00610 380 ProSiteProfiles AP2/ERF domain profile. 72 137 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 CDD AP2 172 233 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 SUPERFAMILY DNA-binding domain 76 138 IPR016177 GO:0003677
Blo14g00610 380 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Blo14g00610 380 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00638 Blo-Chr6:29389774 Blo14g00610 Blo-Chr14:10677634 3.78E-123 dispersed
Blo14g00610 Blo-Chr14:10677634 Blo17g00353 Blo-Chr17:3726507 9.01E-98 dispersed
Blo14g00610 Blo-Chr14:10677634 Blo01g00418 Blo-Chr1:4714030 8.97E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13270 PF00847 AP2 4.30E-12 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo14g00610 K09285 - tcc:18589035 398.667