Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00028 ATGATACCCAATACCTCTTCCTCCTCTCTCCCTTCTTCTGAACCATTTTCTTGCACAGAAAATGGAGTTATTAACAAGAGGAAGAGAAGACCGGCTGGAACCCCAGATCCAGACGCAGATGTAGTATCGCTTTCGCCAAAAACATTGCTTGAATCCGATCGTTATGTGTGTGAGATCTGCAACCAAGGATTTCAGAGAGATCAGAATCTGCAAATGCATCGCCGGAGACACAAAGTGCCGTGGAAATTGCTGAAGAGGGAGTCGCCGGCGGTGAGGAAGAGAGTGTTTGTTTGTCCGGAGCCGAGCTGTCTGCACCACGACCCTTGTCACGCCCTCGGAGATCTCGTCGGAATAAAGAAGCATTTCCGGCGAAAGCACAGCAGTCACAAGCAATGGGTTTGTGAAAAATGCTCAAAGGGATATGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGCCGAGTTTTCTCAAGGTTCTAA 513 47.56 MIPNTSSSSLPSSEPFSCTENGVINKRKRRPAGTPDPDADVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPAVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 234270 234881 + BLOR06422 Blo15g00028 70428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00028 170 Pfam Zinc finger, C2H2 type 55 77 IPR013087 -
Blo15g00028 170 MobiDBLite consensus disorder prediction 1 20 - -
Blo15g00028 170 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 169 - -
Blo15g00028 170 PANTHER OS08G0467100 PROTEIN 9 169 - -
Blo15g00028 170 MobiDBLite consensus disorder prediction 1 42 - -
Blo15g00028 170 SUPERFAMILY beta-beta-alpha zinc fingers 52 78 IPR036236 -
Blo15g00028 170 Gene3D Classic Zinc Finger 45 128 - -
Blo15g00028 170 SMART c2h2final6 132 159 IPR013087 -
Blo15g00028 170 SMART c2h2final6 55 77 IPR013087 -
Blo15g00028 170 SMART c2h2final6 96 126 IPR013087 -
Blo15g00028 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Blo15g00028 170 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo13g00122 Blo15g00028 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00789 Blo-Chr1:11529792 Blo15g00028 Blo-Chr15:234270 1.24E-102 dispersed
Blo15g00028 Blo-Chr15:234270 Blo06g00128 Blo-Chr6:5176019 2.38E-71 dispersed
Blo13g00122 Blo-Chr13:2984275 Blo15g00028 Blo-Chr15:234270 1.60E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13286 PF00096 zf-C2H2 0.0012 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00028 K25871 - qsu:112038406 338.191