Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00049 ATGGCGGGAGGAAAAGTGAGGAAAGAAAAGCCAAAGACGGCTGGAAAAAGTGTCCCCTATCAGGGAGGCATATCGTTCCACAAATCGAAGGGCCAACATATTCTGAAGAATCCGTTATTGGTTGACACCATTGTTCAAAAGTCTGGTATTAAGAGCACAGATATTGTCCTCGAGATTGGTCCTGGTACTGGTAACCTCACCAAGAAACTCTTAGAAGCTGGGAAGATGGTCATTGCTGTTGAGCTTGATCCTCGCATGGTCCTTGAGTTGCAGAGGCGTTTTCAAGGCAGTCCACTCTCCAGTCGATTGAAGGTTATCCAAGGAGATGTCCTAAAAACAGACCTCCCCTATTTTGACATATGTGTGGCGAATATTCCTTATCAAATTTCGTCTCCTCTGACTTTTAAGTTGCTAAATCACCAGCCTGCATTTCGATGTGCAATCATTATGTTTCAGAGAGAATTTGCAATGAGACTGGTCGCTCAGCCAGGCGACAAACTCTATTGTCGTCTCACCGTCAACACCCAACTCTTAGCTCGAGTCTTTCACCTCCTCAAGGTGGGAAAAAACAATTTTCGTCCACCACCCAAAGTCAATTCATCAGTGGTTCGAATCGAGCCCAGGAAGCCACGAATAGAAGTGAAGCAGAAAGAATGGGACGGGTTTTTGCGAATTTGCTTCAACCGGAAAAACAAAACTCTTGGTTCGATTTTCAGGCAAAAGTCTGTTCTCTCATTACTGGAGAAGAACTACAAGACCTTGCAGGCACTCCATCTCTCACTCGATGGTTCTGGTTCAGTGGCAAATGCAGACAGCAAGGTGGATTTTCCGAGATTTGAGGGCTCTTGTGAAGATCTGAATATGGAGATGGAGGTGGATGATGGTGGAGGAGATGATGAGATGGAGATGGGGGAAGAAACAGAAGGGGAGGCTTCTGAATTTAAAGACAAGGTTTTGGCAGTTTTGAAGGAGGGAGATTTCGAAGAAAAGAGATCTTCTAAGCTTACATTACAGGAGTTCTTATACCTTCTGTCGTTGTTCAACAAGCCGTTGGTGATAGAAGAGGTGGAAGTGAGCCCTCCGCAACCTATGGAGATTAGAGTCAAAGTAGTCTGCACCTCCCTGTGTCGCAGTGATGTCTCGGCTTGGGAAACCCAGGTAGGTTCTTTGGCTTTGGGCATTTTCTCATTTTATGGGCGAGGGAAATTCATTGTGGAGAGTGTGGGTGAAGGAGTGACTGAATTCAAGGAGGGAGACCACGTGCTTACTGTATTCACTGGAGAATGCAAGACATGCAAGCATTGCACTTCTGGTAAAAGCAATGCGTGCAAAGTGTTGGGGTTGGAAAGGAGAGGTGTAATGCATAGTGATCAGAAGACCCGTTTCTCACTTAATAGGAAGCCTGTTTATCATTATTGTGCGGTTTCAAGTTTCAGTGAATATATTGTTGTTCACAATGGCTGTGCTGTGAAAGTCAGCCCAGAAGCACCTCTGGAAAAAGTATGCCTTTTAAGCTGTGGTGTTGCAGCAGGTCTAGGGGCAGCTTGGAACATTGCTGATATAACCAAAGGGTCAACAGTAGTAATTTATGGCCTTGGAACTGTAGGACTTTCTGTTGCTCAAGGTGCCAAAGCTAGGGGTGCGTCTCAAATAATTGGTGTAGACATCAATCCTCAGAAGGGTGAAAAAGCTAAAGCTTTTGGAGTTACTGAATTTGTTAACCCAAATGAGTGCACTGAATCCATTCAGCAGGTCGTTACTCGAATGACCAATGGTGGGGCAGATTACTCGTTTGAATGCATCGGCGACACAGGAATGATAAGCACCGCATTGCAGTCATGTTGTGATGGATGGGGTGTGACTGTTACTCTTGGTGTTCCGAAAGTAAAGCCGGAAATTACAGCTCATTATGGTATTTTTCTTTCTGGAAGGACATTGAGAGGATCTCTACTTGGAGGATGGAAACCTAAATCTGACCTACCTTCACTAGTTGGAATGTATATTAAAAAGGAAATCCAGATTGATGAGTACATTACTCATAACTTGTCATTTGAAGAAATCAACCAAGCTTTCACTTTAATGCAAGAAGGCAAGTGTTTGCGTTATATGGACAAGAGAGTCAAAGTGTTAGCTAACAGAGCCGCCGGAGAAGGCAACAATGGCGGTGAGACTTTTGCAGAGCGGGCTGAGTCATACTACCACCAACGCCCCCATCTATTAGCTCTCCTGCAAGACTTGTATAATGCATACACGACTTTATCAGAACGCTATGTGCAAACCGTTGCCAAACACCATCACCACCGTCGAATCTCATCATCCCAAATCTCAGTTGTCGATCAAGAGTGCAGTTACGATCAGGAAGAAGATGCGGGGGCGAGCCAGATCGATTCTGATGCAGAGAGCTCTCTCTCCTATCAGCTGCCACCGCTCCTCTGCCCTGAAAGCAACACAATACGAGACAGTGATGCTTTGCTTGCTGAGATTGTGATAAAAAATGTGGATTGTGATATTCTTCTCCACGAGGTTAGTTTAATGGAGCGACACTGTGGGGATGCGGCTAAGAAAATAGAGTTGCAGAAGAGTTTGCTGGAGGTGTTAGAATCTGAGAGGCTCATACTGCTGCATGAGAATGCGAGTTTGATGTATAAGGTAGCAACTTTAATGGAGGAGAACAAAGGGTTGGCAGCGGAGTCTGCATTCATGAAGAGAAAGGCAGGAGAGATGGCAAGATGTGTGCTGAAGATGAGAGAAGACCACAGAGTTTGCATGCTTAGCAGTAAAATAGAGGATCTTCAGGGGCAGATATACAGGCTGGAGAAGAGAAACAGAGAGTATTACGAGCAGTTAGTGAAGAAAGACAAACTAATAGAAGGACAGAATAACATCACCAAAAACAAGAGCAAGAATGAGAAAGGAGTTGCTTTGGATGCATGCTTTCAAATTAGGCGGCTTCAGTTGTCTAAGAGTAGCATCACTAAGAACAAGAAAAATGGTTGTAAAAAAGGCTTCGGGTGGTTCAAGAGAGTGAAGAACTTTGACATGTTTCTATGCGGTCAAAACCCGAATTCTACTTAG 3075 44.55 MAGGKVRKEKPKTAGKSVPYQGGISFHKSKGQHILKNPLLVDTIVQKSGIKSTDIVLEIGPGTGNLTKKLLEAGKMVIAVELDPRMVLELQRRFQGSPLSSRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLNHQPAFRCAIIMFQREFAMRLVAQPGDKLYCRLTVNTQLLARVFHLLKVGKNNFRPPPKVNSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQKSVLSLLEKNYKTLQALHLSLDGSGSVANADSKVDFPRFEGSCEDLNMEMEVDDGGGDDEMEMGEETEGEASEFKDKVLAVLKEGDFEEKRSSKLTLQEFLYLLSLFNKPLVIEEVEVSPPQPMEIRVKVVCTSLCRSDVSAWETQVGSLALGIFSFYGRGKFIVESVGEGVTEFKEGDHVLTVFTGECKTCKHCTSGKSNACKVLGLERRGVMHSDQKTRFSLNRKPVYHYCAVSSFSEYIVVHNGCAVKVSPEAPLEKVCLLSCGVAAGLGAAWNIADITKGSTVVIYGLGTVGLSVAQGAKARGASQIIGVDINPQKGEKAKAFGVTEFVNPNECTESIQQVVTRMTNGGADYSFECIGDTGMISTALQSCCDGWGVTVTLGVPKVKPEITAHYGIFLSGRTLRGSLLGGWKPKSDLPSLVGMYIKKEIQIDEYITHNLSFEEINQAFTLMQEGKCLRYMDKRVKVLANRAAGEGNNGGETFAERAESYYHQRPHLLALLQDLYNAYTTLSERYVQTVAKHHHHRRISSSQISVVDQECSYDQEEDAGASQIDSDAESSLSYQLPPLLCPESNTIRDSDALLAEIVIKNVDCDILLHEVSLMERHCGDAAKKIELQKSLLEVLESERLILLHENASLMYKVATLMEENKGLAAESAFMKRKAGEMARCVLKMREDHRVCMLSSKIEDLQGQIYRLEKRNREYYEQLVKKDKLIEGQNNITKNKSKNEKGVALDACFQIRRLQLSKSSITKNKKNGCKKGFGWFKRVKNFDMFLCGQNPNST 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 367779 379532 - BLOR06443 Blo15g00049 70449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00049 1024 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 24 272 IPR011530 GO:0000179|GO:0006364
Blo15g00049 1024 Gene3D - 349 701 - -
Blo15g00049 1024 CDD AdoMet_MTases 56 138 - -
Blo15g00049 1024 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 678 764 IPR011684 GO:0003779
Blo15g00049 1024 Gene3D - 511 649 - -
Blo15g00049 1024 Gene3D - 212 348 - -
Blo15g00049 1024 Gene3D Vaccinia Virus protein VP39 26 210 IPR029063 -
Blo15g00049 1024 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 56 83 IPR020596 GO:0000154|GO:0000179|GO:0008649
Blo15g00049 1024 SUPERFAMILY GroES-like 657 702 IPR011032 -
Blo15g00049 1024 Coils Coil 928 948 - -
Blo15g00049 1024 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 497 669 IPR036291 -
Blo15g00049 1024 SMART rADcneu6 40 209 IPR020598 GO:0000154|GO:0000179|GO:0008649
Blo15g00049 1024 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 22 260 IPR029063 -
Blo15g00049 1024 Pfam Ribosomal RNA adenine dimethylase 25 244 IPR001737 -
Blo15g00049 1024 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 348 702 - -
Blo15g00049 1024 MobiDBLite consensus disorder prediction 1 21 - -
Blo15g00049 1024 Pfam Zinc-binding dehydrogenase 535 655 IPR013149 -
Blo15g00049 1024 PANTHER ALCOHOL DEHYDROGENASE 348 702 - -
Blo15g00049 1024 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 25 253 IPR011530 GO:0000179|GO:0006364
Blo15g00049 1024 SUPERFAMILY GroES-like 347 516 IPR011032 -
Blo15g00049 1024 Pfam Alcohol dehydrogenase GroES-like domain 364 491 IPR013154 -
Blo15g00049 1024 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 26 275 IPR001737 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00049 K00001 E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1] - csv:101212994 588.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01328 Blo-Chr1:50743003 Blo15g00049 Blo-Chr15:367779 6.13E-122 transposed
Blo02g00368 Blo-Chr2:4037950 Blo15g00049 Blo-Chr15:367779 9.14E-21 transposed
Blo02g00845 Blo-Chr2:31780796 Blo15g00049 Blo-Chr15:367779 2.19E-23 transposed
Blo02g00846 Blo-Chr2:31807423 Blo15g00049 Blo-Chr15:367779 6.58E-13 transposed
Blo05g00813 Blo-Chr5:29711540 Blo15g00049 Blo-Chr15:367779 6.64E-75 transposed
Blo06g00176 Blo-Chr6:7265888 Blo15g00049 Blo-Chr15:367779 4.73E-29 transposed
Blo10g00607 Blo-Chr10:18461214 Blo15g00049 Blo-Chr15:367779 8.63E-108 transposed
Blo17g00721 Blo-Chr17:21375177 Blo15g00049 Blo-Chr15:367779 4.09E-73 transposed
Blo18g00224 Blo-Chr18:2198768 Blo15g00049 Blo-Chr15:367779 5.86E-122 transposed
Blo13g00093 Blo-Chr13:1633458 Blo15g00049 Blo-Chr15:367779 4.79E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g17 . Blo15g00049 . . . Bpe07g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda06g00833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g974 . . Bda06g00834 . . . . . . . . . . . . Cpe20g00047 . . . . . . . . . . . . . . . . . . . Lsi02g00035 Csa01g00512 Chy12g01573 Cme12g02031 . Blo15g00049 . . Bpe07g01060 . . . . . . Cma13g01106 . Car13g00939 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004481 2 0 1 3 2 1 1 1 1 1 2 2 1 1 1 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00049 Blo_Chr15 FPKM 15.400782 13.461203 14.850874 14.363532 28.143932 27.812376 27.743269 19.789082 21.055714 19.594114