Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00055 ATGGCGTCAATCGGGTTTCTGGGTCTGGATCACTTGACCCTCGAGTTGGCTGCTTCCCTTCTTCGCTCTGGATACAACGTTCGAGCTTGCGAGGTAAATCAACCTTTGATAGACGCTTTTTTAGAGCTAGGAGGAATTAGATGTGTCAGCCCTGTGGAAACTGGAAAAGATGTAGCAGCGTTGGTTGTTCTAACGAAATTTGCAAACCAAGTTAAAGATATATCTTTTGGGTTGAACAAGAATGCTGTTGTCGTTCTGTGCCATTCTGATTCATCATCAGACAATCTGGCAAACCTCGTTGCTGGTGATTTTGAAAATATTTATGTTGTTGATGTACATGTCTTTAAGGCAGCATCCGAAGCTTTAAATGGAAAACTCTCGATTGCTTTGTCTGGGAGGGCTGATGCAATTGCAAAAGTGCAACCTTTTCTGTCTGCCATGTGTGAAAAGCTATACATTTTTCCGGGCACCGTTGGAGCTGGAAGTAAAATCAAATTGGTCATTGACCTACTTGAGGGAATTCATCTTGTTGCTTCACTGGAGGCTATTTCTCTGGCAGCAAAATCTGGTATTCATCCATGGATCATTTATGACATCATTTCTAATGCTGCAGGAAATTCATGGATTTTCAAGAATCATGTTCCCCACATGTTGAGGGGCGATTCTGTACCTCATTTTTTGAGCACTTATGTTCAAAAGCTGGGGACTGTTTTGGATAAGGCCAAATCACTTACGTTTCCTCTTCACCTCTTGGCTGTTGCATATCAACAACTTGCATTTGGCTCCTCGCTTGATTTTCAAAGTGACAATAAGGCATCAGTAATTGAGGTTTGGGAATCTGTTAGTGGAGTGACTATTTCAGATGCAGTGAAGAAGGATATCTATAATCCTGAAAAACTGGCGAATGAAATTATGTCTAAATCAAAAACCATCAAGCGAGTTGGTTTCATTGGTCTTGGAGCAATGGGGTTTGGGATGGCTACTCATCTCGTGAAATCAAACTTCTGTGTTTACGGTTTTGATGTGTATAAACCAACATTAACTCGATTTGTTGATTCTGGTGGTTTGGTTGGAAACTCTCCAGCAGAAATTAGTAAAGATGTTGATGTGCTTGTTATTATGGTGACAAATGAATCTCAAGCTGAGAGTGTTCTGTATGGTGATTTAGGAGCTGTTTCAGCCCTTCCATCTGGAGCTTCTATTATTCTGTCATCTACAGTCTCTCCTGGATTTATACGCCAACTCGAGAAACGCTTGCAAAATGAAGGCAAGAATTTGAAACTGATCGATGCTCCAGTTTCTGGTGGCGTTCAACGTGCCTCGAATGGAACTCTGACTGTAATGGCTGCTGGAACAGATGAGGCTCTTACAAGTGCTGGTTCAGTTCTCTTAGCTTTAAGCGAGAAGCTTTATGTTATTCAAGGAGGCTGTGGAGCTGGAAGTGGTGTAAAGATGATCAATCAATTGCTTGCTGGTGTTCATATAGCCTCAGGTGCTGAGGCAATGGCCTTTGGAGCTAGATTAGGGCTTAATACACGGACTATGTTTGATGTCATCATAAATAGCAGTGGAACATCCTGGATGTTTGAAAACCGTGTTCCACACATGTTGGACAATGATTATACCCCATACTCTGCGCTTGACATCTTTGTCAAAGATTTGGGCATTGTCGCTCGTGAATGTGCATCAATGAAAGTTCCCCTTCCGATTTCAACTGTCGCACACCAGCTCTTTTTGTCAGGTTCGGCTGCAGGTTGGGGTCGGCAAGATGATGCTGGTGTAGTTAAGGTTTATGAGACGCTCACAGGAGTGAAGGTTGCAGGAGAACCTCCCATTCTTAAGAAAGAAGTTATATTGAAATCTCTTCCTCCAGAATGGCCTGAAGATCCAATTCCTGATTTTCAAATTTTAAACGAGAAAAGTATAAAGACTTTGGTAGTTTTGGATGATGATCCAACGGGAACACAAACTGTTCATGACATTGAGGTGTTAACAGAATGGTCTGTGGAGTCCCTCATTGAACAATTCCGTAAAAGTCCTAAATGCTTTTTCATATTGACAAACTCCAGATCATTGAGTTCAAGAAAGGCTAGCTTATTAATAGAAGAAATCTGCAAAAACGTACGAACTGCATCTGAATCTGTCAAGAACGCAGATTATACTGTAGTTTTGAGAGGAGATTCAACCTTACGAGGTCATTTTCCCGAGGAACCCGATGCTGCTGTCTCAGTCTTAGGAGAGATGGATGCATGGATTATTTGTCCCTTTTTCTACCAAGGCGGGCGTTATACTATTGACGACATACATTATGTTGCAGATTCTGATAAGCTTGTCCCTGCCGGGGAGACAGAGTTTGCAAAAGATGCATCATTTGGCTTCAAATCTTCAAACCTTTGTGAGTGGGTTGAAGAGAAAACTGCTGGCCGCATTCAAGCCAACACCATTTCCTCTATTTCTCTTCAACTTCTTAGAAAGGGTGGACCAGAGTCTGTTTGTGAGCATCTGTGCAATTTGCAGAAGGCAGAATTGAAAGGCAAGCGGTTTTTATGTCGGACAGCTGCTAGCTTTGTTTCTGCCAGGGTTGGAATTATTCCACGAGCTCCTCTTTTGCCAAAAGATGTTGGGATTGACAAAGAAAGGAATGGCAGTCTTATAGTTGTGGGTTCATATGTCCCAAAAACAACAAAACAGGTTGAAGAACTTAAATTGCAATGTAGCTCGTTCGTTAGAAGCATTGAGGTTTCTGTCACTAGACTTGCTATGAGCTCGCCAGAAGAGAGGGAAGAGGAAATTAGGAAAACAACCGAGATGGCTGATGTTCTTCTTGGGACTCAGAAGGAAACTCTGATAATGACTAGCCGAGAGCTTATCACAGGAAAAAGTCCGTCAGAGAGTTTGGAGATCAATTTCAGGGTGAGCTCTGGTTTGGTGGAAATAGTTCGGCGGATATCTATTAAACCTCGTTATATTCTTGCCAAGGGGGGAATCACCTCCTCAGATCTTGCTACGAAAGCACTTGAAGCAAAATGTGCAAAAATAGTTGGACAAGCTCTGCCTGGTGTTCCCTTATGGCAGCTTGGTCCTGAAAGCAGACATCCAGGAGTGCCATACATTGTTTTTCCTGGGAATGTTGGTGATAATAAAGCCCTAGCCGAACTTGTCAGTTCTTGGGCTCGTCCGGCAAGACTTTCCTCGACAAAAGACATCCTTCTTAATGCAGATAAGGGTGGATATGCAGTAGGAGCATTCAATGTATATAATCTAGAAGCAGTTGAGGCAGTTGTTGCTGCAGCAGAGGAAGAATTAAGTCCTGCCATTTTACAGATCCATCCAGGTGCTTTAAAGCTAGGAGGGTATCCTTTGGTTGTCTGTTGCATTGCTGCTGCTGAACGAGCCAAAGTTCCTATTACTGTTCACTTTGATCATGGAACTTCACGGAAAGATCTTTTGGAAGCTCTTGAATTGGGCTTTGACTCAGTCATGGTAGATGGTTCACATCTTTCCTTCGAGGAGAATGTTTCCTACACAAAGTTTATATCATCCCTTGCTCATTCAAATGGCATGTTGGTCGAAGCTGAACTTGGGAGATTGTCTGGTACGGAAGATGATTTGACTGTTGAAGATTATGAAGCTAAACTGACTGATATTAATAAGGCTGAAGAGTTCATTGATGAAACTGGAATTGATGCTTTGGCAGTATGCATTGGTAATGTTCATGGAAAATATCCAGCTAGTGGCCCAAACCTTAGACTTGATTTGCTTAAGGATCTACATGCATTGTGTTCAAAGAAAGGAGTTTTTGTGGTGCTTCATGGAGCCTCTGGATTGTCTCAGGATCTAATCAAGGAATGCATCAAGCGGGGCGTGACAAAATTCAATGTAAACACAGAAGTACGAAAGGCGTATATGGATTCTTTGAGTTCGCCGAGCAAAGATCTTGTCGACGCTATGACTGCAGCCAAGGAAGCCATGAAAGCTGTCATTGCAGAGAAGATGCACTTGTTTGGTTCGGCAGGAAAAGCATAA 4026 42.45 MASIGFLGLDHLTLELAASLLRSGYNVRACEVNQPLIDAFLELGGIRCVSPVETGKDVAALVVLTKFANQVKDISFGLNKNAVVVLCHSDSSSDNLANLVAGDFENIYVVDVHVFKAASEALNGKLSIALSGRADAIAKVQPFLSAMCEKLYIFPGTVGAGSKIKLVIDLLEGIHLVASLEAISLAAKSGIHPWIIYDIISNAAGNSWIFKNHVPHMLRGDSVPHFLSTYVQKLGTVLDKAKSLTFPLHLLAVAYQQLAFGSSLDFQSDNKASVIEVWESVSGVTISDAVKKDIYNPEKLANEIMSKSKTIKRVGFIGLGAMGFGMATHLVKSNFCVYGFDVYKPTLTRFVDSGGLVGNSPAEISKDVDVLVIMVTNESQAESVLYGDLGAVSALPSGASIILSSTVSPGFIRQLEKRLQNEGKNLKLIDAPVSGGVQRASNGTLTVMAAGTDEALTSAGSVLLALSEKLYVIQGGCGAGSGVKMINQLLAGVHIASGAEAMAFGARLGLNTRTMFDVIINSSGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVARECASMKVPLPISTVAHQLFLSGSAAGWGRQDDAGVVKVYETLTGVKVAGEPPILKKEVILKSLPPEWPEDPIPDFQILNEKSIKTLVVLDDDPTGTQTVHDIEVLTEWSVESLIEQFRKSPKCFFILTNSRSLSSRKASLLIEEICKNVRTASESVKNADYTVVLRGDSTLRGHFPEEPDAAVSVLGEMDAWIICPFFYQGGRYTIDDIHYVADSDKLVPAGETEFAKDASFGFKSSNLCEWVEEKTAGRIQANTISSISLQLLRKGGPESVCEHLCNLQKAELKGKRFLCRTAASFVSARVGIIPRAPLLPKDVGIDKERNGSLIVVGSYVPKTTKQVEELKLQCSSFVRSIEVSVTRLAMSSPEEREEEIRKTTEMADVLLGTQKETLIMTSRELITGKSPSESLEINFRVSSGLVEIVRRISIKPRYILAKGGITSSDLATKALEAKCAKIVGQALPGVPLWQLGPESRHPGVPYIVFPGNVGDNKALAELVSSWARPARLSSTKDILLNADKGGYAVGAFNVYNLEAVEAVVAAAEEELSPAILQIHPGALKLGGYPLVVCCIAAAERAKVPITVHFDHGTSRKDLLEALELGFDSVMVDGSHLSFEENVSYTKFISSLAHSNGMLVEAELGRLSGTEDDLTVEDYEAKLTDINKAEEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKDLHALCSKKGVFVVLHGASGLSQDLIKECIKRGVTKFNVNTEVRKAYMDSLSSPSKDLVDAMTAAKEAMKAVIAEKMHLFGSAGKA 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 427379 445394 + BLOR06449 Blo15g00055 70455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00055 1341 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 3 152 IPR006115 GO:0050661
Blo15g00055 1341 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 313 471 IPR006115 GO:0050661
Blo15g00055 1341 Pfam Sugar-binding N-terminal domain 645 856 IPR010737 -
Blo15g00055 1341 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 159 276 IPR029154 GO:0051287
Blo15g00055 1341 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 478 598 IPR029154 GO:0051287
Blo15g00055 1341 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 3 267 - -
Blo15g00055 1341 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 158 285 IPR008927 -
Blo15g00055 1341 Pfam Nucleotide-binding C-terminal domain 884 1050 IPR031475 -
Blo15g00055 1341 Gene3D Aldolase class I 1057 1341 IPR013785 -
Blo15g00055 1341 Gene3D - 1 154 - -
Blo15g00055 1341 SUPERFAMILY YgbK-like 645 1054 - -
Blo15g00055 1341 CDD TBP_aldolase_IIB 1066 1339 IPR000771 GO:0005975|GO:0008270|GO:0016832
Blo15g00055 1341 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 269 1264 - -
Blo15g00055 1341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 151 IPR036291 -
Blo15g00055 1341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 311 470 IPR036291 -
Blo15g00055 1341 Gene3D - 476 607 IPR013328 GO:0016491
Blo15g00055 1341 TIGRFAM cbbA: ketose-bisphosphate aldolase 1064 1341 IPR000771 GO:0005975|GO:0008270|GO:0016832
Blo15g00055 1341 Gene3D - 644 850 IPR037051 -
Blo15g00055 1341 Gene3D - 156 285 IPR013328 GO:0016491
Blo15g00055 1341 PANTHER ALDOLASE-RELATED 3 267 - -
Blo15g00055 1341 Gene3D - 874 1056 IPR042213 -
Blo15g00055 1341 PANTHER ALDOLASE-RELATED 269 1264 - -
Blo15g00055 1341 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 478 605 IPR008927 -
Blo15g00055 1341 SUPERFAMILY Aldolase 1065 1341 - -
Blo15g00055 1341 Gene3D - 306 475 - -
Blo15g00055 1341 Pfam Fructose-bisphosphate aldolase class-II 1065 1340 IPR000771 GO:0005975|GO:0008270|GO:0016832
Blo15g00055 1341 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 316 329 IPR002204 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00055 - - - qsu:111993890 2021.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00055 Blo-Chr15:427379 Blo11g00166 Blo-Chr11:1293237 2.27E-08 dispersed
Blo15g00055 Blo-Chr15:427379 Blo12g00768 Blo-Chr12:26031879 1.85E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00055 Blo_Chr15 FPKM 4.631672 3.452776 1.508897 0.0 3.441302 1.596303 2.429144 1.048991 1.364789 1.265101