Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00057 ATGTCAGCTTCCAAAATCTTTCACTTATCCACTCTTCTGTCTCGCACAACCCCGGCCCCTAAACTTCTCTCTCTCCTTCTCCTCTCCAAGCCCTTTCCTTCTCAATCTCTGAGCTTCATCCGCTACGGTTCATCTGCTGCCTTTCAGGCTGTCGCCGACGGTAGCCCAGAAGCTCCACCCGCCAGTGTCGTCCACCATCCGTGGCCGGAATGGGTGACCTTCGTAGACGGATTGAAGACCAAGGGTTACTTTATAGAATACCCTCCAAAAGATGGGGATAAAGATGAGGAAGGCGGTGTAGACGCTTCTGACTCAGTCTCTGTTCGTGGTTACAGTGAAATGAATGTCTTGAAGAATGCCTGTCTAAGCTTTGCGCGCGACCGCTATGACATTTTGAAATCATTATCTATAGAAGATATTAAAGTCGTCGTCAAAAGTGGATGTCCTAATCTATTTCGAAAAGCTGTTAACTCAGCAAAAAGATTGCGAGTCTATGTGCATCTGGATGAAGGGGATGTTTGTAGTTCGTGCAATCTTCGAGGCTCTTGTGATAAAGCTTACGTGATTTTAAAGGAAACGGAAGCTGCTTCACGGACGGTGGATTTAGTGCGTATATTGTTATTACATGCTCTTGATCCACTGGTTGTTTCTGCCGGAGTGAAACCTCCCGGTAGGGAGTCCATTGACTTGTCTGCAAGGAGATTGCTCTCTCAGTTATCTGAATTGAGTGGAAAATCCCCTGTTCCGACATTACACATACATGATGTTAAACCTCCCACTAAAAAAGAGAAGTCAAATTACTTGACGGATCCTGACTTGTTTCAGAATGTTGAGATGAAAAGAGGAGATTGGATGTGCTCCAAGTGTAATTTTCTGAATTTTTCAAAAAACTTGCGGTGCCGAAAGTGTAATGAGGATGGCCCCAAACAAACTCAAGCAAATGATGTTGAGATGAAGAGTGGAGATTGGCTTTGCTTCGAATGTAATTTCATGAATTTTTCAAGGAATATACGGTGCTTGAAGTGCAAAGCTGATGGGCCGAAAAGGGTGGCTCCCAATGAAGTTGAAATGAAGAAAGGAGATTGGAACTGCGCACAATGTGGGTTCATGAACTTTGCCAGCAATAGAAAATGCCTGAGGTGCCGAGATGATCGACCCGAGAGAGAGCTTAAACCCGGGGAGTGGGACTGCCCCTCGTAA 1200 45.33 MSASKIFHLSTLLSRTTPAPKLLSLLLLSKPFPSQSLSFIRYGSSAAFQAVADGSPEAPPASVVHHPWPEWVTFVDGLKTKGYFIEYPPKDGDKDEEGGVDASDSVSVRGYSEMNVLKNACLSFARDRYDILKSLSIEDIKVVVKSGCPNLFRKAVNSAKRLRVYVHLDEGDVCSSCNLRGSCDKAYVILKETEAASRTVDLVRILLLHALDPLVVSAGVKPPGRESIDLSARRLLSQLSELSGKSPVPTLHIHDVKPPTKKEKSNYLTDPDLFQNVEMKRGDWMCSKCNFLNFSKNLRCRKCNEDGPKQTQANDVEMKSGDWLCFECNFMNFSRNIRCLKCKADGPKRVAPNEVEMKKGDWNCAQCGFMNFASNRKCLRCRDDRPERELKPGEWDCPS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 451855 455575 - BLOR06451 Blo15g00057 70457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00057 399 Gene3D - 350 388 - -
Blo15g00057 399 Gene3D - 274 310 - -
Blo15g00057 399 Gene3D - 311 349 - -
Blo15g00057 399 SUPERFAMILY Ran binding protein zinc finger-like 276 308 IPR036443 -
Blo15g00057 399 ProSiteProfiles Zinc finger RanBP2 type profile. 319 348 IPR001876 -
Blo15g00057 399 Pfam Zn-finger in Ran binding protein and others 319 347 IPR001876 -
Blo15g00057 399 Pfam Zn-finger in Ran binding protein and others 358 381 IPR001876 -
Blo15g00057 399 PANTHER ASPARAGINE-RICH PROTEIN 50 348 - -
Blo15g00057 399 PANTHER ZINC FINGER PROTEIN 343 399 - -
Blo15g00057 399 SUPERFAMILY Ran binding protein zinc finger-like 353 387 IPR036443 -
Blo15g00057 399 ProSitePatterns Zinc finger RanBP2-type signature. 284 303 IPR001876 -
Blo15g00057 399 ProSitePatterns Zinc finger RanBP2-type signature. 362 381 IPR001876 -
Blo15g00057 399 ProSiteProfiles Zinc finger RanBP2 type profile. 280 309 IPR001876 -
Blo15g00057 399 SMART zf_4 360 384 IPR001876 -
Blo15g00057 399 SMART zf_4 282 306 IPR001876 -
Blo15g00057 399 SMART zf_4 321 345 IPR001876 -
Blo15g00057 399 ProSiteProfiles Zinc finger RanBP2 type profile. 358 387 IPR001876 -
Blo15g00057 399 PANTHER ZINC FINGER PROTEIN 50 348 - -
Blo15g00057 399 SUPERFAMILY Ran binding protein zinc finger-like 313 346 IPR036443 -
Blo15g00057 399 PANTHER ASPARAGINE-RICH PROTEIN 343 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00057 - - - csv:101221680 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00476 Blo-Chr13:25655279 Blo15g00057 Blo-Chr15:451855 6.81E-65 dispersed
Blo15g00057 Blo-Chr15:451855 Blo19g00019 Blo-Chr19:279804 4.06E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00057 Blo_Chr15 FPKM 10.337195 11.037014 8.714426 9.061782 9.299354 8.850692 10.484132 10.626236 9.98386 10.637944