Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00058 ATGAGAAGGGCTTCGATTCTCGCCTCCTCTGCTATCTCCCGATCGCTTTGCAGCTCCTCTGGCGGAGCTACCTCCTCTTTCACTTTGAACAACCGCATCTTTCAGGCGGCGCTGTTTTGTAGCAGCAGCGTCGGCAGTATTAATGGTCGTCAGAGTTGGTTCGCTTCCATTCGGAATTATGTTTTCGGTGGCTCGACTGGAGCTTTGTCTCTTGGAATTGCCGGGGTTCTAGTTTCTTTTGGTGCCGCGACGTCGCTTTCCCGGGAGGTCTACGCGAAAGAGCCGGTGCAGCCTGATCTCGTCCCTAAGGAGGTGGTGCTTTATCAGTATGAAGCTTGTCCTTTTTGCAACAAGGTTAAAGCATTTTTGGATTATTATGATATACCTTACGAAGTCGTGGAGGTCAACCCAATTAGTAAGAAGGAAATTAAGTGGTCTGATTATAAGAAGGTTCCAATATTGATGGTCGATGGTGAACCACTAATGGATTCTTCAGTTATTATTGATCAGTTGAGAAATAAGATTCTTGCTGATAAGAAAGTGCAGTTAACCACTGGCTCTGATGATGAGGAAGAGAAAAAATGGCGTGGGTGGGTTGATAATCACTTGGTCCACGTCTTGTCACCAAACATATATCGAAATACTTCTGAAGCCCTTGAGTCATTCGACTACATCACTAGCAACGGAAATTTCAGCTTTACAGAAAAACTTACAGTAAAATATGCCGGAGCTGCAGCTATGTATTTTGTATCTAAAAAACTGAAAAAGAAGTATAACATAACCGATGAGCGTGCTGCCCTATATCAAGCGGCGGAAACATGGGTGGAAGCTTTAAATGGAAGAGACTTCCTAGGGGGAACAAAGCCAAATTTAGCAGACCTTGCAGTTTTCGGGGTGCTAAGACCGATTCGGTACTTGAGAGCGGGTAGAGATATGGTCGAACACACACAAATTGGCGACTGGTTCTTGTTGTATTCAACTTTTGCTCTGCGAATTTTTATGCAGAAATTGAAGACTCGTGTGATTAAAAAGAATGTTAATCCAGAGTGGAATGAAGATTTGACTCTTCCTATTACAGATCCCAATCTTCCAGTTAAGCTAGCAGTATACGATCATGACACGTTTAGCAGGGATGACAAAATGGGAGACACAGAAATCGAAATAAAGCAATTCATAGAAGCTCTGAAGATGACTTTTAAGGGCCTGGCTAGTGGTACAATAATCTCAAGAATGAAACCCAGTAGACAAAATCTGCTGGCCGAGGAGAGCAGCATTGTCTGGCAGAACGGCAAGATAGTCCAAGATCTCTGCCTCCGGTTGAGAAAAGTAGAATGCGGCGAGCTAGAAATACAACTGAAATGGCTTGACCTTCCAGGCCGAGTTTTAACTAGATTCGAGTCGGATTTCGACCAACGATACGATTTGGTTTTCAAGATTTTGATCCCTCGAAATCGTGATCTAAACTCTTAG 1470 43.67 MRRASILASSAISRSLCSSSGGATSSFTLNNRIFQAALFCSSSVGSINGRQSWFASIRNYVFGGSTGALSLGIAGVLVSFGAATSLSREVYAKEPVQPDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYEVVEVNPISKKEIKWSDYKKVPILMVDGEPLMDSSVIIDQLRNKILADKKVQLTTGSDDEEEKKWRGWVDNHLVHVLSPNIYRNTSEALESFDYITSNGNFSFTEKLTVKYAGAAAMYFVSKKLKKKYNITDERAALYQAAETWVEALNGRDFLGGTKPNLADLAVFGVLRPIRYLRAGRDMVEHTQIGDWFLLYSTFALRIFMQKLKTRVIKKNVNPEWNEDLTLPITDPNLPVKLAVYDHDTFSRDDKMGDTEIEIKQFIEALKMTFKGLASGTIISRMKPSRQNLLAEESSIVWQNGKIVQDLCLRLRKVECGELEIQLKWLDLPGRVLTRFESDFDQRYDLVFKILIPRNRDLNS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 456595 468364 + BLOR06452 Blo15g00058 70458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00058 489 Gene3D C2 domain 327 464 IPR035892 -
Blo15g00058 489 SFLD Prostaglandin E synthase like 72 322 - -
Blo15g00058 489 ProSiteProfiles Glutaredoxin domain profile. 93 187 - -
Blo15g00058 489 SMART C2_3c 301 400 IPR000008 -
Blo15g00058 489 Gene3D Glutaredoxin 99 178 - -
Blo15g00058 489 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 333 399 IPR035892 -
Blo15g00058 489 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 103 179 IPR004045 -
Blo15g00058 489 SFLD Prostaglandin E synthase like.1 72 322 IPR034334 GO:0050220
Blo15g00058 489 Pfam C2 domain 335 391 IPR000008 -
Blo15g00058 489 ProSiteProfiles C2 domain profile. 283 401 IPR000008 -
Blo15g00058 489 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 322 - -
Blo15g00058 489 ProSitePatterns Glutaredoxin active site. 107 123 IPR011767 -
Blo15g00058 489 Gene3D - 186 326 - -
Blo15g00058 489 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 1 322 - -
Blo15g00058 489 Pfam Glutathione S-transferase, N-terminal domain 107 172 IPR004045 -
Blo15g00058 489 SUPERFAMILY Thioredoxin-like 104 175 IPR036249 -
Blo15g00058 489 CDD GST_C_mPGES2 189 322 IPR034335 -
Blo15g00058 489 SUPERFAMILY GST C-terminal domain-like 185 322 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00058 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - vvi:100266342 447.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00171 Blo15g00058 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00058 Blo-Chr15:456595 Blo16g00116 Blo-Chr16:2719330 9.70E-61 dispersed
Blo13g00171 Blo-Chr13:6133924 Blo15g00058 Blo-Chr15:456595 0 transposed
Blo15g00058 Blo-Chr15:456595 Blo06g01009 Blo-Chr6:33326549 2.49E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g197 . . Bda06g00822 Bda15g00512 Bpe12g00695 . . Bma12g01245 . . Cma10g00331 Cma11g00316 Car10g00313 Car11g00291 . . Cpe04g01366 Bhi02g00150 Tan09g1812 . . Hepe09g0396 . . Cla06g01416 Cam06g1569 Cec06g1629 Cco06g1621 Clacu06g1531 Cmu06g1485 Cre06g2294 . . . Cone19ag0335 . . . . Blo13g00171 Blo15g00058 . . Bpe07g01049 . . Bma08g00057 . Cmo10g00357 . . . . . . . . . . . . . . . . . . . . . Lsi06g01278 Csa01g00439 Chy02g02306 Cme02g01677
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00058 Blo_Chr15 FPKM 0.660606 0.985317 2.628174 2.745599 17.431118 16.478729 17.907118 2.05653 2.052045 1.28806