Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00062 ATGAAAGTCTACTTTTCTCCAATGGAGGAAGAAAACCAGCAGAAACAAGCTCCAAGCTCGACGATAATGGAGCATACAGTTGCAGAGGAAAGACTCGGCTTGAACGTGGAAGGTAGAAGCTGTGGCCGGAGACAGAAAGTTGTGGAGGAAGTGAAGAAGCAGCTATGGTTAGCAGGGCCTTTGATCTTTGTTAATCTGTTGCAGTATGGTTTGCCGATCATTTCTCTGATGTTCGTTGGTCATCTTGGGAAATTATCTCTCTCTGGTGCTGCATTGGCTACTTCCTTCGCTTCCATCACTGGTTTCACCTTGCTGCTGGGGATGGCTAGTGCTTTGGATACATTTTGTGGGCAGTCTTATGGAGCAAGCCATTATCAAATGTTAGGCACACACATGCAAAGAGCAATGTTTGTTCTTATAATTGCTAGCATACCAACTTCCATTATCTGGGCTTACACTGGAGAATTTCTCAAGCTTCTCGGCCAAGATTCTAAAATATCAGCCGAAGCCGGACAATATGCTCGGTATATGATTCCGAGTATTTTTGCATATGGTATTCTTCAATGCCTCACCAAATTCTTACAAACTCAGAACATTGTCTTCCCAATGATGCTAACCTCAGCAATGACGTTAGCAACTCACATCTTACTTTGTTGGTTTATGGCGTTCAAATCCGGACTTGGAGCAAAGGGCGTTGCCTTGGCGAGTTCAGTCTCGTATTGGATCAATGTGTTACTAATGGCAATTTATGTTAAGTTCTCCTCTTCATGTGCAAATACTTGGACTGGCTTTTCAAAGGAAGCCTTCTGCAATGTCTTCACTTTCCTTAGACTTGCCATTCCTTCAGCTTTCATGGTCTGCTTGGAACTCTGGTCATTTCTAATCCTGGTTCCCTTGGCTGGTTTTCTTCCTGATCCAGAGCTACAAACATCAGTGCTTTCGATTTGCTTTAATACTGCTGCAGTGGTTTGGATCATCCCCTATGGACTAAGTTGTGCTGTAAGCACTCGGGTTTCGAACGAATTAGGGGCCGGACATCCCAAAACAGCACGTTTATCAGTTCATATCGTGTTGGTAATGGCCACTACAGAGGGAATAGTTGTTGGATGTGTGATGATACTAATAAGAAACGTCTGGGGATATGCATATACCAAGCAAATTGAAGTTGTCAAGGGTGTAGCAACCATGATGCCTATTCTTGCAGCCTCTAACTTTCTTGATGGACTCCAATGTGTTCTTTCAGGCGCAGCCAGGGGATGTGGGTGGCAAAAAATTGGAGCATTTATCAATCTTGGCTCATACTATGTTATTGGAATTCCATGTGCTGTCTTGTTGGCTTTTGTCTTCCACATTGGTGGAAAGGGTCTTTGGCTGGGGATGATTTGTGCACTTTTTGTTCAAGTCATTTCTCTGAGTACTAAACTCATTCTCACCAATTGGGATGAACAAGCGAAGAACGCGATGGAAAGAGTTCAAAGCTCGACGACTCGGATCGAATCAGCTTCTTGA 1509 43.74 MKVYFSPMEEENQQKQAPSSTIMEHTVAEERLGLNVEGRSCGRRQKVVEEVKKQLWLAGPLIFVNLLQYGLPIISLMFVGHLGKLSLSGAALATSFASITGFTLLLGMASALDTFCGQSYGASHYQMLGTHMQRAMFVLIIASIPTSIIWAYTGEFLKLLGQDSKISAEAGQYARYMIPSIFAYGILQCLTKFLQTQNIVFPMMLTSAMTLATHILLCWFMAFKSGLGAKGVALASSVSYWINVLLMAIYVKFSSSCANTWTGFSKEAFCNVFTFLRLAIPSAFMVCLELWSFLILVPLAGFLPDPELQTSVLSICFNTAAVVWIIPYGLSCAVSTRVSNELGAGHPKTARLSVHIVLVMATTEGIVVGCVMILIRNVWGYAYTKQIEVVKGVATMMPILAASNFLDGLQCVLSGAARGCGWQKIGAFINLGSYYVIGIPCAVLLAFVFHIGGKGLWLGMICALFVQVISLSTKLILTNWDEQAKNAMERVQSSTTRIESAS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 496856 500526 + BLOR06456 Blo15g00062 70462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00062 502 Pfam MatE 60 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo15g00062 502 Pfam MatE 281 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo15g00062 502 CDD MATE_eukaryotic 50 486 IPR045069 GO:0042910|GO:1990961
Blo15g00062 502 TIGRFAM matE: MATE efflux family protein 60 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo15g00062 502 PANTHER PROTEIN DETOXIFICATION 43 490 - -
Blo15g00062 502 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00062 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:118348797 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00756 Blo-Chr10:23756077 Blo15g00062 Blo-Chr15:496856 1.59E-105 dispersed
Blo10g00758 Blo-Chr10:23779979 Blo15g00062 Blo-Chr15:496856 2.53E-65 dispersed
Blo15g00062 Blo-Chr15:496856 Blo17g00432 Blo-Chr17:5279622 1.42E-123 dispersed
Blo15g00062 Blo-Chr15:496856 Blo07g00952 Blo-Chr7:28808369 4.20E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g256 . . . . . . . . . . . Cma11g00296 . . . . Cpe04g01386 Bhi02g00113 . . . . . . . . . . . . . . . . . . . . . . Blo15g00062 . . . . . . . Cmo10g00339 Cmo11g00301 . . . . . . . . . . . . . . . . . . . . . Csa01g00418 Chy02g02328 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00062 Blo_Chr15 FPKM 0.0 0.063142 0.449866 0.326963 9.253912 10.731258 8.539434 0.075969 0.075569 0.1123