Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00076 ATGAACCTATGTTCAATATCAATCGATGGAAATCCCGACAAGGATATTTTGCAGCAGAGATTGCATGGCGTTGCTAGACAAAGAGGTGAATTGCAACAAATGGAGATTGAGCTTCAAGCTCAAATTATTGCAAGATCTGAGATATTTGATATGCAGAACAAATTCGAAACTCAAATTAAAGAACATAGTAATTCTGTGATCGAGCTTCAGGAACAACTGTGTGGAAGGGATCAGACCATTTGTGAATTGGAACGAAAAATTGAAGATAAAGATAGAGAGCTCCATGCAATTAAATTAGACAATGAAGCGGCTTGGGCTAAACAGGATCTCTTTAGGGAACAAGATGAAGAAGTAGCAACATATAGAAAAGAGCGAGATCATTCTGAAGCTGAAAGGTCCCAACATATAAAACAAATACATGAACTTCAAGAGCATATTTTAGAAAAAGAGAGGCAGGTTATTGACTTACAAGAACAGCAAAGGGTTTCTCAAGAAACTATTATCTATAAAGATGAACAATTAAGGGAAGCCCATACCTGGATTGCTCGAGTTCAGGAGATGGATGTTTTGCAGTCAACTACAAATCATTCGTTGCAAGCTGAACTACGCGAGCGAACCGAACAATACAATCAACTATGGCTTAGCTGCCAACGACAGTTTGCGGAAATGGAGAGATTTCATTTACATTCAATTCAGCAGCTTCAACTTGAGCTGGCTGATGCAAGAGAGAGGAGTGGAACATACATCAATGGGTCACAAACTTCCATGGAAATTTTAAAAGACGATTCTCAATATGGAAAAAACAATGGATCTAAATTAGATACTAATGGAAGTTCAACCCCCAGTGGAAATACAGGGGCTTTATTGAATGGGAGTTCAGATGATGTTTTGTCTTTTGTTTCAACTGGGAACGCATTAAGTCAGGGTGACCAGGATCAGAGTGTTCCTCTAGTTTCATCATCTCTTGAGGCGCCTACCCATCTTACCTCTGGACAGGTGACTTCTATTCATCCGTTTGTAATGCATCAACAGAGTGGTCCTTGTTCCATTGTCAATCATTTTCACCCAGCATCAGCAGTTTCGTCCATCCAAAGGTGGAATGGTCAGTCGATACCAGAGAATGAACTTCAATTATCCCAAAATGATGAACAACTAACAAAATCAACTGCAAAAGCCAGCAATGAGATGTCTGTTAATGGGGTAGCTCTGCATCCAGACCATTTGAATGGTCAAAATACCGAAATAGGGAGGCTTGATTCAGTGCCTTCACTATCAACTGAAGGAACACAGGTTGATTCTATTGATCGAGGGCCCTTGGTTGTGTCTCAACCTGAACAGAGCCTGCAGCATTTTTCCTCCCAATTTCACAATGCATTAAGACTAGATACTTTTGAACATAAGACTGAAACACAGGAGCAGAATGGTCTGAGTTCTGATGACTATGCAGAAGGGAAAACAGCAAATGGAGTGCAACCAAGTTTTACTGTTAATAAATCTCCATCTGATTTTACTTCCCCGCATTCCATTAATCTTATTGAGTTTGGCATTGATAAAACTCCTGGACCTATTCCAACTGGAGCTTTTGCTCTGGATTCTCCGAGGGTTCTCATGGCCCCCGAAACTCACCTTCTTGATGAAAGATCATTGCTTGCTTGCATAGTTCGAACAATTCCACCAAGTGGTAGAATTCAGATTAGTTCCACGCTACCTAATAGACTGGTGAAGATGCTTGCACCTCTGCACTGGCATGATTATCAAAAAAATTACGGAAAGCTTAATGACTTTGTTTCCAGTCACCCTGAATTATTCGTGATTGAGGGTGATTATATCCTACTCCGGAAAGGGGCGCAAGAAATCATAGCGGCTACAGCAGCTGTTGCTAAGGTTGCTGCAGCGGCAGCAGCTTCTTCTCCAGACTCATCATATTTATCTTCTGTGGCTTTGACTCCAATGTCACAAGCTTATCAATTGAGAAAGATTCCATCTTGCACATTAGTGCAGGATCAACAATTAAATGGTGTTTGCTTTGGCACCGGTGGTCTGTCAAGCGTCAAGCTCCCCAGCAAATCAAAGGATAATAGGGAAATGAATATCCCAGAAACTAAGCCTGGTCAACTATCTGGCGTCAATATTAATCAAAGCATAGGTTCAACAAAAGGGAGACCCAGAAACAATTTTAATGGAAAACATCAGGGCAGAATCGACGGGAACCGAGAACCGGACTCGGAACCGAGGTCTGTTCTGGGTATGATGATACAATCTTTGTTCAGGTATGATGATAGAATGGAACACAAACTTTCAAGAGCTGAAGAGGTATTGATAGCAGGATTTGGACAGAAGGGTCATGCTGTGGGAGATATCCTTGGAGTTAGATTCAAGGTTGTGAAGGTATCTAGTGTCTCACTTCTTGCCCTCTTCAAAGAAAATAAAGAAAAGCCCTGCTATTGGACAACATGTCCTAAAATAGAGGGGAGGAACCGAGAATCGCCGATTCCAGACCCGGAACCGACCTCGGTTATGGGTTTCGGTTCCGGGGTCTATCGGTTCCAGAATTTCGGCCCTCAGACCCTAGCCGGATTCTTCAAGTGCATCGACCCCAGAAACGCATTAGCCTTCAACGTCGTAATATCTGACTTAACTCATGATGGATTTGCGTATTATGCTCTCACGACCTTCTCTTTCATGCACGCTCATGGCGTTCCTGTCGATACATATTCGTTATGTAGCTCGTTGGTGGCTTCATCTTTTGTTGGAGACTACCAATTTGGGAGACAGTTGCACGCCCTGATAATGAAATCAGGGTGGTGGTCAAGTCCTTTTCTGGGCAGTGCTCTGATTGATATGTACGCCAAGACGTTGACGCTCAATGACGCAGTACAGGTGTTTGATGAAATTCCTGTGAAGAACACCGTCTGTGCAAATGCTCTGATGTCAGGCTACGGCGAGTCTAAGATGTGGATTGAGGGACTGGAACTGGTCCGGAAGATGCCAATCTTGAATTTGAGGTACGATCACTTTACACTCTCAGCAACTTTACGTGCTTGTACTGGTTTATCTGCCATAGAATTGGGTAGGCAAGTTCATGGGTGTTTGATCCGCACAATATCTGATGTGGTAAGTGATGTTTTCCTACAAAGTTCATTGATTGAAATGTATGGCAAGTGTGGTATGGTCGAAAAGGCCTGGCAAGTCTTCAATATCTCTGGACTTGAGCAGAGAGAAGGGAGAAATAGAGATATCGTTTTATGGACTTCAATTCTTGGTGTCTATGGCAAAAATGGGTGTTATCAACAAGTGATTGGACTGTATAATTTGATGTTGGTAGAAGGGATTAGACCAGATGAGGTGGCTTTTGTGACTGTCATCTCGGCTTGTGCTCATACCGGTCAAGTCAGCCTTGGGGTCGAGTATTTTGACTCCATGGTGACTGAGTTTAGGCTGGATCCTCGGCCGGAGCATTATAGCTGTTTGATTGATGTGCTTTGCAGGGCCGGAGAGCTGGACAAAGCATGGAAGTTGCTGACTGCCATGGAAAGAAAAGGACATGGCATTGCCAGCGTTTCCTTGTGGGGCTCTTTTCTTAGTGCCTGTATGGAACATGGGAATGTTAAACTCGGAAATTTGGCTGCGAGTAAGGCACTTGAATTCGACCCGAGCAACGTTGGAATCTTCGTAAACCTATCAAATTTATACGCAAGGTTTGGCATGTGGAATGAAATCGAGCGTTTGAGGGACTCACTACGAGAGCGAGGATTGAAGAAAGATTTAGGCTGTAGTTGGGTTGAGGTTGCAAATCCAGAATGCAGGATTTCTGGTCGGAAATAG 3825 43.01 MNLCSISIDGNPDKDILQQRLHGVARQRGELQQMEIELQAQIIARSEIFDMQNKFETQIKEHSNSVIELQEQLCGRDQTICELERKIEDKDRELHAIKLDNEAAWAKQDLFREQDEEVATYRKERDHSEAERSQHIKQIHELQEHILEKERQVIDLQEQQRVSQETIIYKDEQLREAHTWIARVQEMDVLQSTTNHSLQAELRERTEQYNQLWLSCQRQFAEMERFHLHSIQQLQLELADARERSGTYINGSQTSMEILKDDSQYGKNNGSKLDTNGSSTPSGNTGALLNGSSDDVLSFVSTGNALSQGDQDQSVPLVSSSLEAPTHLTSGQVTSIHPFVMHQQSGPCSIVNHFHPASAVSSIQRWNGQSIPENELQLSQNDEQLTKSTAKASNEMSVNGVALHPDHLNGQNTEIGRLDSVPSLSTEGTQVDSIDRGPLVVSQPEQSLQHFSSQFHNALRLDTFEHKTETQEQNGLSSDDYAEGKTANGVQPSFTVNKSPSDFTSPHSINLIEFGIDKTPGPIPTGAFALDSPRVLMAPETHLLDERSLLACIVRTIPPSGRIQISSTLPNRLVKMLAPLHWHDYQKNYGKLNDFVSSHPELFVIEGDYILLRKGAQEIIAATAAVAKVAAAAAASSPDSSYLSSVALTPMSQAYQLRKIPSCTLVQDQQLNGVCFGTGGLSSVKLPSKSKDNREMNIPETKPGQLSGVNINQSIGSTKGRPRNNFNGKHQGRIDGNREPDSEPRSVLGMMIQSLFRYDDRMEHKLSRAEEVLIAGFGQKGHAVGDILGVRFKVVKVSSVSLLALFKENKEKPCYWTTCPKIEGRNRESPIPDPEPTSVMGFGSGVYRFQNFGPQTLAGFFKCIDPRNALAFNVVISDLTHDGFAYYALTTFSFMHAHGVPVDTYSLCSSLVASSFVGDYQFGRQLHALIMKSGWWSSPFLGSALIDMYAKTLTLNDAVQVFDEIPVKNTVCANALMSGYGESKMWIEGLELVRKMPILNLRYDHFTLSATLRACTGLSAIELGRQVHGCLIRTISDVVSDVFLQSSLIEMYGKCGMVEKAWQVFNISGLEQREGRNRDIVLWTSILGVYGKNGCYQQVIGLYNLMLVEGIRPDEVAFVTVISACAHTGQVSLGVEYFDSMVTEFRLDPRPEHYSCLIDVLCRAGELDKAWKLLTAMERKGHGIASVSLWGSFLSACMEHGNVKLGNLAASKALEFDPSNVGIFVNLSNLYARFGMWNEIERLRDSLRERGLKKDLGCSWVEVANPECRISGRK 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 652956 666731 - BLOR06470 Blo15g00076 70476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00076 1274 Coils Coil 111 159 - -
Blo15g00076 1274 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1150 1184 IPR002885 -
Blo15g00076 1274 TIGRFAM PPR: pentatricopeptide repeat domain 1154 1182 IPR002885 -
Blo15g00076 1274 TIGRFAM PPR: pentatricopeptide repeat domain 1081 1115 IPR002885 -
Blo15g00076 1274 MobiDBLite consensus disorder prediction 468 500 - -
Blo15g00076 1274 Coils Coil 52 72 - -
Blo15g00076 1274 Pfam PPR repeat 1116 1142 IPR002885 -
Blo15g00076 1274 Pfam PPR repeat 1081 1111 IPR002885 -
Blo15g00076 1274 Pfam PPR repeat 972 997 IPR002885 -
Blo15g00076 1274 Pfam PPR repeat 1046 1066 IPR002885 -
Blo15g00076 1274 PANTHER OS08G0543600 PROTEIN 2 737 - -
Blo15g00076 1274 Pfam Ribosomal protein S12/S23 762 813 IPR006032 GO:0003735|GO:0005840|GO:0006412
Blo15g00076 1274 Pfam E motif 1200 1262 IPR046848 -
Blo15g00076 1274 Pfam PPR repeat 1153 1178 IPR002885 -
Blo15g00076 1274 MobiDBLite consensus disorder prediction 703 725 - -
Blo15g00076 1274 PANTHER OS08G0543600 PROTEIN 2 737 - -
Blo15g00076 1274 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1079 1113 IPR002885 -
Blo15g00076 1274 Gene3D Tetratricopeptide repeat domain 1039 1217 IPR011990 GO:0005515
Blo15g00076 1274 Gene3D Tetratricopeptide repeat domain 870 1038 IPR011990 GO:0005515
Blo15g00076 1274 Gene3D - 748 814 IPR012340 -
Blo15g00076 1274 MobiDBLite consensus disorder prediction 262 289 - -
Blo15g00076 1274 MobiDBLite consensus disorder prediction 686 744 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00076 - - - qsu:111993978 790.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01050 Blo15g00076 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00080 Blo-Chr4:688833 Blo15g00076 Blo-Chr15:652956 1.41E-18 dispersed
Blo06g01051 Blo-Chr6:33889640 Blo15g00076 Blo-Chr15:652956 0 dispersed
Blo07g00694 Blo-Chr7:22687982 Blo15g00076 Blo-Chr15:652956 1.11E-47 dispersed
Blo13g00912 Blo-Chr13:31663875 Blo15g00076 Blo-Chr15:652956 1.43E-18 dispersed
Blo13g01102 Blo-Chr13:33178631 Blo15g00076 Blo-Chr15:652956 1.18E-18 dispersed
Blo14g00152 Blo-Chr14:1186395 Blo15g00076 Blo-Chr15:652956 1.18E-18 dispersed
Blo15g00076 Blo-Chr15:652956 Blo07g00268 Blo-Chr7:3202439 4.07E-11 dispersed
Blo15g00076 Blo-Chr15:652956 Blo06g01050 Blo-Chr6:33878403 1.59E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00076 Blo_Chr15 FPKM 15.47854 17.407116 27.550358 30.667744 167.851501 149.845932 172.266449 17.011927 15.445473 16.440891