Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00078 ATGAAATCTCCGCTTTGGAGAGTGAGTGTTAGAGCAATTCTGAGTTTGGATTTTGTTGTTCGCTTGTTTTTGGAGGAATTAGCGGAAGAAGACTGGAAGATTAAGCGGGAAGTTCTACTGCAGAAGAAGGTGAGGAGCGTGGATGTGAAAGAAGCTCTGCGTCTTCAAAATGAAAATAACTTCGTGATTCTTGACGTAAGGCCTGAAGCAGAGTTCAAAGAGGGCCATCCACCGGGCGCCATTAACGTCCAAATATACAGGCTGATAAAGGAGTGGACAGCTTGGGACATCGCTAGGCGAGCTGCATTTGCATTTTTCGGCATCTTCTCTGGTACTGAAGAGAACCCAGAATTTCTCCAAATCGTGGAATCAAAGATGTCTAAAGACGCTAAGATAATAGTCGCCTGCACTTCCGGGGGCACCATGAAACCCACCCAAAATCTTCCTGATGGCCAACAATCAAGATCGCTGATCGCAGCCTACGTGCTGGTTCTAAATGGCTACACCAACGTGTTTCACTTAGAAGGCGGCCTGTATTCTTGGTTCAAGGAAGGACTTCCAGCAGAGGCAGAAGATTGA 579 46.63 MKSPLWRVSVRAILSLDFVVRLFLEELAEEDWKIKREVLLQKKVRSVDVKEALRLQNENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQIVESKMSKDAKIIVACTSGGTMKPTQNLPDGQQSRSLIAAYVLVLNGYTNVFHLEGGLYSWFKEGLPAEAED 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 673356 674227 - BLOR06472 Blo15g00078 70478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00078 192 ProSiteProfiles Rhodanese domain profile. 57 190 IPR001763 -
Blo15g00078 192 CDD RHOD 51 181 - -
Blo15g00078 192 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC 27 191 - -
Blo15g00078 192 Pfam Rhodanese-like domain 49 182 IPR001763 -
Blo15g00078 192 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 27 191 IPR043186 -
Blo15g00078 192 Gene3D - 31 189 IPR036873 -
Blo15g00078 192 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 41 187 IPR036873 -
Blo15g00078 192 SMART rhod_4 47 187 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00078 - - - mcha:111011450 299.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00078 Blo-Chr15:673356 Blo15g00245 Blo-Chr15:2546948 2.05E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00468 . 447 753 Sulfurtransferasese/Rhodanese AT1G79230 77.9 3.8e-146 514.6
Blo04g00468 . 435 699 Sulfurtransferasese/Rhodanese AT1G16460 73.6 4.6e-113 404.4
Blo04g00810 . 34 307 Sulfurtransferasese/Rhodanese AT5G23060 61.2 1.6e-85 313.2
Blo16g00465 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 52.5 9.6e-120 427.6
Blo18g00643 . 9 613 Sulfurtransferasese/Rhodanese AT1G09280 63.2 2.1e-219 758.8
Blo13g00668 . 91 460 Sulfurtransferasese/Rhodanese AT2G40760 73.3 6.6e-155 544.3
Blo13g00095 . 87 432 Sulfurtransferasese/Rhodanese AT1G17850 65.4 1.9e-135 479.6
Blo12g00602 . 108 241 Sulfurtransferasese/Rhodanese AT2G42220 76.1 3.1e-57 218.8
Blo09g00271 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.0 1.4e-64 243.0
Blo15g00245 BCT 93 303 Sulfurtransferasese/Rhodanese AT4G24750 73.0 9.9e-93 337.0
Blo08g00130 . 401 616 Sulfurtransferasese/Rhodanese AT5G19370 65.1 2.6e-80 295.8
Blo10g00844 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.9 6.5e-155 543.9
Blo15g00078 . 28 190 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.2e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00078 Blo_Chr15 FPKM 3.26392 3.764032 7.870933 7.555067 5.81014 4.974605 5.806415 10.501155 9.389582 11.247065