Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00080 ATGGATAGCTTCAGCCACGACGAAGAAAGTGGGTTTTTCGACGCCCAAGAGGATATCGAGTCGTGTTCTGAAGTAAGTACGGATAGCATTGAGGCAAACAATTCTATTTTTGGTTTTAACGCATTGGTCGAGGGGAGTTTCTTGTATGATTTATGGAATCGAAGTCCTCTGAGTGTTAACGAGCGTCGAACAAAGTTTTTGAGAATGATGGGACTAAAATCAGACCGAATTTCGGGTGATAATTCTGAAGTTGTTCACAGCAATGTCAGCGATGGAGAAGCATCTACAATGGGGGAAAATAGAGAGGCTATGCCGGGAATTCCAGCATTTGAAGATGGGTTTTATTCGAGTCGATCATCAATGTCGTGCTTCCCGAGCGAGAGCTGTGAAGTTTTAGGGGAATCGGGATCGAAGAAGAATTTGTCGAGCAGCAATGGAACTGCAGAATGCAGTTGCTCAGGCCAGTTGGGAATGGCTGAAGAGTCATCAAGCAGTTGTTCATCACAATCGTCTCAACAAGAGAAGGAATCGAAACCTGCAAATCCGAGACGTTTTAAGGGAATGATTAGAAGAGTCGATCGGAGTTGGTTGAGGAGGTTAAGATCCATCGCATGCGTGTTTGATAATCACAATAAAGGGGTTAAATTCATATCGGACGAAGAAGATGAAGACGAAGATGGAGATCGGCCGTTCAGAGTTCAGAGAGTTAAGGTTCGGCAGAGCAAGAAACAATCGAAGGAACTCTCTGCTCTATTTACAGGTCAAGATATCCAGGCTCATGAAGGTGCTATATTGGCCATGAAATTCAGTCTGGACGGGAGGTATCTTGCAAGCGGCGGTGAAGACGGGATTGTGAAAGTCTGGCAAGTGATCGAGGACGAGAGATCGAACGAACGCGATATTCCGGTTTTGGATCAGTCCTGCATTTACTTCTCTGTGAATCATCTCTCTGAACTGAAACCCCTGCTTGTGGATAAGGACAAGCTTTGCAACTCAACAAGTTTGAAACAAACATCCGAATCGGCCTGCGTCATTTTCCCTCCTAAAATCTTCCGAATATCGGAGAAACCATTGCACGAGTTCTATGGCCACAGTCGCGAGGTTTTGGATCTCTCGTGGTCACGGGAGAAGTATCTCCTTTCATCGTCCGTTGACAAAACTGTTCGTCTTTGGCGGGTTGGAAGCAAAGATTGCCTCAAAGTGTTTTCGCATAGCAATTACGTGACGTGCGTGCACTTCAATCCCGTGGATGAAAATTACTTCATGAGTGGATCGATCGACGGAAAAGTTCGGATTTGGGGAATTTCGTGCTCCCAAGTTGTTGATTGGACCAACATTAGAGAAATAGTCACTGCAGTGTGTTACCGTCCCGATGGACAGGCTAGCGTTGTTGGCTCCATTGACGGAAACTGTCGCTTTTACACTATTTCTGATAATCATCTGCAATTGGAAGCTCAAATAGGCTTGCACAGCAAGAAGAAATCGGGGAGTAAGAAGATAACGAGCTTTCAGTTTCTTCCTCAAGATTCTAGCATGCTAATGGTGAGCTCTGCCGATGCCCGAATCAGAATTCTTCACGGCACTTGCGTGGTCTGTAAATACGAAGGAACTCGTAATGCCGGAAACCAGATTTCGGCATCGCTTACATCGGACGGAAAATATATAATCTCGGCTTGTGGGAATTCTAAGGTATACGTATGGAACTGCGGAGACCAAAACGATAGTTCTTTGTCTCGAGCCAAAAGATGTTATGAACACTTTTCGTCCAATGCTTCCATTGCGATTCCTTGGAGTGGTTTTGGATGCGGGAACTCCAACGGTGAAAGGCAATTTCGTGGATTCGACCGGGAATCACCAGAACTTCTGCCTTTCTGTTCGTCTGCACGATTCTCTCTAAACCGGGAATTCTTCTTGGAGTCTTTGCCGAAAGGATCTGCGACTTGGCCTGAAGAGGAACTTCTTACTACAAGCAACCTATCGATGCACAAGTCTCGATACAAGTTTCTCAAGGAGTCTTGCCGGAGTGCATCTGAGTCCCATGCGTGGGGACTGAAACACCCAGATCCCCATTCTCAAAGAAAAACAAGAACCCTAACAGGAGCGATTCAAAAGAAGGGAAGGAGAGAGAGAGAAGCGGACCTGGAAGAGTTCTCAAACGGGGAGTTTGGCGACATCAGATTGGGAAGGGGGGAGTTGGGGAAGATGGAGAGGGGCGGAGGAAGAAGGAGCGGTGGAAGGCATGAGAGGAAGGTCATGAGCCTCGTCAGGATCGTCCTGGTCGTCAGAGGTGGAGAGATTGATACAGGAGCATCGGTCAAGGGAGGCAAAAAAGGCAGAGGAGACGCTGGTGCCCACCCAGGAGGCGACGCCGTTGAGCTTCTCGTAGGAGATATATCCAGACAGATTTTCCATCCCGCACCTTAA 2424 47.03 MDSFSHDEESGFFDAQEDIESCSEVSTDSIEANNSIFGFNALVEGSFLYDLWNRSPLSVNERRTKFLRMMGLKSDRISGDNSEVVHSNVSDGEASTMGENREAMPGIPAFEDGFYSSRSSMSCFPSESCEVLGESGSKKNLSSSNGTAECSCSGQLGMAEESSSSCSSQSSQQEKESKPANPRRFKGMIRRVDRSWLRRLRSIACVFDNHNKGVKFISDEEDEDEDGDRPFRVQRVKVRQSKKQSKELSALFTGQDIQAHEGAILAMKFSLDGRYLASGGEDGIVKVWQVIEDERSNERDIPVLDQSCIYFSVNHLSELKPLLVDKDKLCNSTSLKQTSESACVIFPPKIFRISEKPLHEFYGHSREVLDLSWSREKYLLSSSVDKTVRLWRVGSKDCLKVFSHSNYVTCVHFNPVDENYFMSGSIDGKVRIWGISCSQVVDWTNIREIVTAVCYRPDGQASVVGSIDGNCRFYTISDNHLQLEAQIGLHSKKKSGSKKITSFQFLPQDSSMLMVSSADARIRILHGTCVVCKYEGTRNAGNQISASLTSDGKYIISACGNSKVYVWNCGDQNDSSLSRAKRCYEHFSSNASIAIPWSGFGCGNSNGERQFRGFDRESPELLPFCSSARFSLNREFFLESLPKGSATWPEEELLTTSNLSMHKSRYKFLKESCRSASESHAWGLKHPDPHSQRKTRTLTGAIQKKGRREREADLEEFSNGEFGDIRLGRGELGKMERGGGRRSGGRHERKVMSLVRIVLVVRGGEIDTGASVKGGKKGRGDAGAHPGGDAVELLVGDISRQIFHPAP 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 683090 687278 + BLOR06474 Blo15g00080 70480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 401 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 395 434 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 480 526 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 245 289 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 436 475 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 527 568 IPR001680 GO:0005515
Blo15g00080 807 SMART WD40_4 354 392 IPR001680 GO:0005515
Blo15g00080 807 MobiDBLite consensus disorder prediction 161 185 - -
Blo15g00080 807 MobiDBLite consensus disorder prediction 81 95 - -
Blo15g00080 807 Gene3D - 238 592 IPR015943 GO:0005515
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 436 IPR001680 GO:0005515
Blo15g00080 807 MobiDBLite consensus disorder prediction 78 105 - -
Blo15g00080 807 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 684 - -
Blo15g00080 807 Pfam WD domain, G-beta repeat 356 391 IPR001680 GO:0005515
Blo15g00080 807 Pfam WD domain, G-beta repeat 397 433 IPR001680 GO:0005515
Blo15g00080 807 Pfam WD domain, G-beta repeat 258 288 IPR001680 GO:0005515
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 393 - -
Blo15g00080 807 MobiDBLite consensus disorder prediction 768 787 - -
Blo15g00080 807 PANTHER WD REPEAT DOMAIN 44 6 684 IPR040324 -
Blo15g00080 807 MobiDBLite consensus disorder prediction 161 176 - -
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Blo15g00080 807 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 436 - -
Blo15g00080 807 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Blo15g00080 807 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Blo15g00080 807 PRINTS G protein beta WD-40 repeat signature 421 435 IPR020472 -
Blo15g00080 807 SUPERFAMILY WD40 repeat-like 257 571 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00080 - - - zju:107421839 736.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo07g00327 Blo15g00080 CCT
Blo09g00017 Blo15g00080 CCT
Blo07g00327 Blo15g00080 ECH
Blo09g00017 Blo15g00080 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00080 Blo-Chr15:683090 Blo16g00526 Blo-Chr16:21600463 1.26E-112 dispersed
Blo15g00080 Blo-Chr15:683090 Blo06g01058 Blo-Chr6:33948009 0 wgd
Blo15g00080 Blo-Chr15:683090 Blo07g00327 Blo-Chr7:4246234 0 wgd
Blo15g00080 Blo-Chr15:683090 Blo09g00017 Blo-Chr9:174584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00080 Blo_Chr15 FPKM 60.497593 61.196072 32.134296 34.052319 13.54619 14.204939 12.442274 1.38317 1.045467 1.282129