Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00084 ATGGAAGTTACACAGGTATTGTTGAATGCACAGTCGATTGATGCATCAGCCAGAAAGCAGGCGGAAGAAACTTTAAGACAATTTCAGGAGCAAAACCTTCCCAGCTTTTTGCTGTCACTTTCTGGTGAATTAGCAAGTGAAGAGAAACCAGTTGACAGCCGGAAATTAGCAGGTTTGGTACTTAAGAATGCTTTGGATGCCAAGGAACAACACAGAAAGTTCGAACTTATTCAAAGATGGCTGTCTCTGGACAGCAATATTAAGACCCAGATCAAAGCTTGTTTGCTGAAGACATTATCTTCTTCTGTTAGTGATGCCAGGTCTACAGCATCTCAAGTTATTGCCAAAGTAGCTGGGATTGAATTGCCCCAAAAACAATGGTCAGAACTCATTGGTTCACTTTTATCAAATATTCATCAGCAACCTTCTCATGTCAAGCAAGCTACCTTAGAGACCCTTGGTTATTTATGTGAGGAAGTATCTCCTGATGTTGTTGATCAAGATCAAGTTAATAAGATATTGACGGCTGTAGTTCAGGGTTTGAGTGCATCTGAAAGGAATGATGATGTTAGGCTTGCTGCAACACGAGCGCTGTACAATGCTTTGGGCTTTGCTCAGGCAAACTTTAGCAATGATATGGAACGTGATTATATAATGAGAGTCATTTGTGAGGCCTCTCAGTCCCCAGAAGTGAAAATTCGACAGGCAGCTTTCGAGTGTTTGGTTTCCATTTCTTCAACCTACTATGATAAATTAGCTCCTTACATACAAGATATATTTGGTATTACCGCAAAGGCAGTTCGGGAAGATGAAGAGCCTGTTGCTCTTCAAGCTATCGAGTTTTGGAGTTCTATTTGTGATGAGGAGATTGATATTTTAGAGGAATATGGGGGTGATTTTAGTGGAGATTCAGATATTCCGTGCTTTTATTTTATCAAGCAGGCGCTCCCTGCTTTAGTCCCTATGTTGTTGGAAACACTCCTCAAGCAGGAGGAGGACCAAGATCAGGATGAAGGTGCTTGGAACATTGCAATGGCTGGGGGTACATGTCTTGGTTTGGTTGCTCGAACAGTGGGAGACGATGTGGTGCCTCTTGTGATGCCATTCATTCAAGAGAATATAACAAAGTCAGACTGGAGGCAGAGGGAGGCAGCCACTTATGCCTTTGGTTCAATTTTGGAGGGCCCTTCCCCTGACAAATTGACGCCTATAGTTAATGTTGCATTAACCTTTATGCTCAGTGCATTAGTAAATGATCCACATAATCATGTGAAGGACACAACAGCGTGGACTCTTGGAAGAATTTTTGAATTTCTTCATGGCTCATCTGTGGATACACCCATAATTAACCAGGCAAACAGCCAACAGATCATCACAGTTTTGCTTCAGAGCATGAAAGATGTTCCAAATGTTGCTGAAAAAGCCTGTGGCGCTCTCTATTTCCTTGCCCAGGGTTATGAGGAGATTGGCCCATCTTCTCATTTGACTCCATATTTTCAGGAAATTGTTCAAACTCTTCTAAACGTCACTCATAGAGAAGATGCTGGGGAATCGCGTTTGAGGACTGCGGCATATGAAGCACTTAATGAAGTGGTGAGATGTTCTACTGATGAAACGGCCACCATGGTGTTACAACTAGTTCCTGTCATTATGATGGAGCTACACAATACCCTGGAGGGGCAAAAGCTTTCATCCGATGAGAGAGAGAGACAAGGGGAGTTACAGGGTCTTCTCTGTGGGTGCTTACAAGTATTGATTCAGAAAATATGTTCGTCAGATATGAATAAGTATTCCTTTACCCAGTTTGCAGATCAAATAATGGGACTCTTCCTTAGGGTTTTTGCATGTCGAAGTGCTACCGTGCATGAGGAAGCTATGCTCGCCATTGGAGCTCTTGCCTATGCTACTGGACCTGATTTTGCCAAGTACATGCCGGAGTTCTTTAAGTATTTGGAGATGGGTCTTCAGAATTTCGAGGAATACCAAGTGTGTGCTGTGACAGTAGGTGTGGTAGGGGACATATGCAGGGCTTTAGAAGATAAGATTTTACCTTATTGTGATGGGATTATTACGCAACTTCTCAAAGATCTATCAAGTGACCAGTTGCATCGGTCTGTGAAACCTCCTATTTTCTCATGCATTGGAGACATAGCACTTGCAATCAGCGAGAACTTTGAAAAATACTTGATGTATGCCATGCCCATGCTACAGAGTGCCGCAGAGTTGTCTTCTCACACTGTTGGAGCTGATGATGAAATGACGGAGTACACAAATTCTCTTAGGAACGGTATCCTGGAGGCATATTCAGGAATTTTTCAGGGATTCAAGAACTCTCCAAAAACACAGCTCTTGGGCCCTTATGCACCGCACATTCTCCAGTTTTTGGACAGTATATACATGGGAAAAGACATGGATGAGGTTGTGATGAAAACGGCCATTGGACTTCTTGGAGATCTTGCTGACACACTAGGAAGTAGCGCCGGTTCTTTAATTCAGCAATCTGTGTCGAGCAAAGACTTTTTAAATGAATGCTTGTCCTCAGATGACCATTTGATTAAAGAATCTGCTGAATGGGCCAAGATGCGGAAATGGTGGCCTCCTACGCAGTCCTTGTATCTTGAAGGCGTCCAATCGTTTTCAGTTGCTTGTCAAAAGCAAAAGAGTCGCTTTAAGCTTTACATGATACCTCTCAGAGCTGTTGCTCGTCATTCGGCATTGACACATTCTGCTGCGGGTATATCTGATGTGCAGGATCACCAAAACCTTATTTCTTCTGTTCCTTCTCTTCCAGATGACTACCAGAGAAATAACATCTCCGATGAATTGGAAGAATTTGAGATGCAGTTGAAGGAGTTATTTACTGAAGTCAAAGCATTGATTAAGAATGGGAAAAAGAACGAAGCCATAGACATACTTGAAGCAAATTTTGAATATGTGAAGGAACAGTTGGCTGCAGGTGCTAAAGGCATTGAGGAAGCTGCGCTTATTGACATTGTAGCCCTGGGGTATCTAGCTGTAGGTGACTTTGAGACTGTCGCCTCTGTATTGGTTATGTTGAATCAGATTGTTGACAGTCTAAAGGATAGTGAACCACTTCTGGATTCAGTGCTGATGCATATGGGAAGCATGTACATGACTTTAGAGAAATTTAAGAAATCAATGAATATGTACCAGAGAGCTATTACTATCATGGAAAACAAATATGGGAAAGATAGTTCCTTTCTCGTCACTCCGATGCTGGGAATGGCAAAAGCTCTCTCAATGTTTGGAAGAGCCTCAAAAGCGGTGAAGATTTATCGTCATGCAATTACTATCTTGGAGTCCAGCCGGGGCACAGAGAGTGTAGAACTGGTTATTCCTTTGATTAATATGGGAAATCTTTTTCTTAGAGAAGGAAAAGCTGTTGATGCTGAAGCTTCCTTTACCAGAATTTTGGACATATATTCGAAGTTATATGGAGAAAATGATGGAAGAGTTGGGCTAGCCATGTCCTCCCTTGCCCGTGCTAAGTGTGCAGATGGAACAGCTGAAGAAGCTATATCTTTATATAAAAAGGCTCTTCAGATTATCAAGAATTCTAACTATATGGATTCAGATGACAGCAGAATAGAGAAGATAAGGATCGATTTATCAGAATTGCTTCATGTTGTCGGAAGAGGAAAAGAAGGCCGAGAACTGCTTGAAGAGTGTTTGTTGATTACGGAAAAGTACAAAGGGAAAGAACATCCCAGATATGGACATAACCTAACGAATCTCGCCATTTCATATTCGCGCTCGAAGAATTTTGCGGAGGCCGAACGATTACTCAAGACGTGTTTGGAAATCATGGTTGAAACAGTAGAACCTGACGACCAGTCCATCACGATTCCAATGATGCATCTTGCTGTTGCTCTTTATCACCTAAAGCGGGACGAAGAGGCCGAAGAACTCGCATTGGAAGCTTTGCGCATTCGTGAGAAGTCATTCGGAAAAGATTCTCTTCCTGTCGGCGAAGTGCTGGACTGTTTGGTTTCCATTCAGACTAGAATGGGGAAGGATGATAAAGAAATTCTGACTCTGCTTTACAGATTGCTGAATATTCAAGAGAAAGAGTTGGGAACTGAGAATGAAGAGATTTTGCCAACCCTGAAAAAGATTATTTTTTTCTTGGACAAGCTAGGAATGAAGATCGAAAAATTGAAGTACGAAAAGATCTTATTGACACTTAGAGCGAAATTCGGGCGACAGATTCAAAGTTAA 4239 42.09 MEVTQVLLNAQSIDASARKQAEETLRQFQEQNLPSFLLSLSGELASEEKPVDSRKLAGLVLKNALDAKEQHRKFELIQRWLSLDSNIKTQIKACLLKTLSSSVSDARSTASQVIAKVAGIELPQKQWSELIGSLLSNIHQQPSHVKQATLETLGYLCEEVSPDVVDQDQVNKILTAVVQGLSASERNDDVRLAATRALYNALGFAQANFSNDMERDYIMRVICEASQSPEVKIRQAAFECLVSISSTYYDKLAPYIQDIFGITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGGDFSGDSDIPCFYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDVVPLVMPFIQENITKSDWRQREAATYAFGSILEGPSPDKLTPIVNVALTFMLSALVNDPHNHVKDTTAWTLGRIFEFLHGSSVDTPIINQANSQQIITVLLQSMKDVPNVAEKACGALYFLAQGYEEIGPSSHLTPYFQEIVQTLLNVTHREDAGESRLRTAAYEALNEVVRCSTDETATMVLQLVPVIMMELHNTLEGQKLSSDERERQGELQGLLCGCLQVLIQKICSSDMNKYSFTQFADQIMGLFLRVFACRSATVHEEAMLAIGALAYATGPDFAKYMPEFFKYLEMGLQNFEEYQVCAVTVGVVGDICRALEDKILPYCDGIITQLLKDLSSDQLHRSVKPPIFSCIGDIALAISENFEKYLMYAMPMLQSAAELSSHTVGADDEMTEYTNSLRNGILEAYSGIFQGFKNSPKTQLLGPYAPHILQFLDSIYMGKDMDEVVMKTAIGLLGDLADTLGSSAGSLIQQSVSSKDFLNECLSSDDHLIKESAEWAKMRKWWPPTQSLYLEGVQSFSVACQKQKSRFKLYMIPLRAVARHSALTHSAAGISDVQDHQNLISSVPSLPDDYQRNNISDELEEFEMQLKELFTEVKALIKNGKKNEAIDILEANFEYVKEQLAAGAKGIEEAALIDIVALGYLAVGDFETVASVLVMLNQIVDSLKDSEPLLDSVLMHMGSMYMTLEKFKKSMNMYQRAITIMENKYGKDSSFLVTPMLGMAKALSMFGRASKAVKIYRHAITILESSRGTESVELVIPLINMGNLFLREGKAVDAEASFTRILDIYSKLYGENDGRVGLAMSSLARAKCADGTAEEAISLYKKALQIIKNSNYMDSDDSRIEKIRIDLSELLHVVGRGKEGRELLEECLLITEKYKGKEHPRYGHNLTNLAISYSRSKNFAEAERLLKTCLEIMVETVEPDDQSITIPMMHLAVALYHLKRDEEAEELALEALRIREKSFGKDSLPVGEVLDCLVSIQTRMGKDDKEILTLLYRLLNIQEKELGTENEEILPTLKKIIFFLDKLGMKIEKLKYEKILLTLRAKFGRQIQS 1412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 701227 715351 + BLOR06478 Blo15g00084 70484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00084 1412 SUPERFAMILY ARM repeat 1 859 IPR016024 -
Blo15g00084 1412 PANTHER IMPORTIN BETA 2 861 IPR040122 GO:0006606
Blo15g00084 1412 Coils Coil 1047 1067 - -
Blo15g00084 1412 PANTHER IMPORTIN SUBUNIT BETA-1 2 861 IPR027140 GO:0006913
Blo15g00084 1412 ProSiteProfiles Importin-beta N-terminal domain profile. 21 101 IPR001494 GO:0006886|GO:0031267
Blo15g00084 1412 Gene3D Tetratricopeptide repeat domain 1009 1207 IPR011990 GO:0005515
Blo15g00084 1412 Pfam MalT-like TPR region 1036 1317 IPR041617 -
Blo15g00084 1412 SUPERFAMILY TPR-like 1036 1275 IPR011990 GO:0005515
Blo15g00084 1412 Pfam HEAT-like repeat 379 435 - -
Blo15g00084 1412 SMART tpr_5 1076 1109 IPR019734 GO:0005515
Blo15g00084 1412 SMART tpr_5 1160 1193 IPR019734 GO:0005515
Blo15g00084 1412 SMART tpr_5 1118 1151 IPR019734 GO:0005515
Blo15g00084 1412 SMART tpr_5 1034 1067 IPR019734 GO:0005515
Blo15g00084 1412 SMART tpr_5 1246 1279 IPR019734 GO:0005515
Blo15g00084 1412 SMART tpr_5 1288 1321 IPR019734 GO:0005515
Blo15g00084 1412 ProSiteProfiles TPR repeat profile. 1034 1067 IPR019734 GO:0005515
Blo15g00084 1412 Coils Coil 935 962 - -
Blo15g00084 1412 Gene3D - 1 867 IPR011989 -
Blo15g00084 1412 Gene3D Tetratricopeptide repeat domain 1208 1410 IPR011990 GO:0005515
Blo15g00084 1412 SMART IBN_N_2 21 101 IPR001494 GO:0006886|GO:0031267
Blo15g00084 1412 Pfam Importin-beta N-terminal domain 21 100 IPR001494 GO:0006886|GO:0031267
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00084 K14293 KPNB1, IPO1; importin subunit beta-1 - csv:101203580 1527.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01407 Blo-Chr3:40601465 Blo15g00084 Blo-Chr15:701227 6.87E-11 dispersed
Blo06g01058 Blo-Chr6:33948009 Blo15g00084 Blo-Chr15:701227 0 dispersed
Blo15g00084 Blo-Chr15:701227 Blo03g00263 Blo-Chr3:5505614 9.90E-06 dispersed
Blo07g01118 Blo-Chr7:31077471 Blo15g00084 Blo-Chr15:701227 0 transposed
Blo15g00388 Blo-Chr15:5453032 Blo15g00084 Blo-Chr15:701227 5.30E-13 transposed
Blo15g00084 Blo-Chr15:701227 Blo02g01164 Blo-Chr2:43294558 4.89E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1022 . Blo15g00084 . . . Bpe07g01019 . . . . Cma02g01125 Cma15g01022 Car02g00933 Car15g00954 . . . . . . . . . . Cla01g00035 Cam01g0032 Cec01g0031 Cco01g0033 Clacu01g0035 Cmu01g0033 Cre09g2473 Cone1ag0996 Cone5ag0701 . . . Csa05g00040 Chy09g01444 . . . Bda06g00790 Bda15g00788 . Bpe12g00347 Bma08g00391 Bma12g01215 . Cmo02g01157 Cmo15g01084 . . . . . . Bhi12g00657 . . . . . . . . . . . . . Lsi09g00016 . . Cme09g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001919 2 2 2 2 2 2 2 2 2 2 2 2 4 3 2 3 2 3 0 2 2 2 2 4 2 3 2 4 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00084 Blo_Chr15 FPKM 9.1884 9.95118 5.949205 6.246917 13.017929 13.20531 14.72013 1.076022 1.090483 1.484957