Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00087 ATGGTCGTTTCCTACTTCATGAGGTCATTTTTCGGTATTAGAGAAGACAGGGCACAGGCGACGGGGTTTATACTCGTAGTAGTCTACCAGCATCCCGGCTCCAATTCCATTCGCTCCTCCCCTATCGATTGCCGCCCCAATCTCTTCCGTTCGTCGCAGAAGGATCGATATATCCCCAAAGACACAATTATCATTAGTGGATATCAGAGAAACTCGAGTATGGCAGACAAAGCAGCAAAATCAGTGGCAAAAGTTATTGGGGAATACCAATTCCCATGGAGAGAAAAGTTATCAAAATATAGGAATGAGCTATCCAAGGGTGTGTGGGGCTACTGGGAGCTAGGAGCATGGAAGCCGCTCGGAATAAGTGCCCGTCGCCGTGCTAGAATCCGAAAAGAAGTGCTTATGGCGGGGGAAGATTGGCCCTATGACCCAGAGAAGAAAGAGATGAGAACCAAAAGGAAAGGCCACAAATGTGACAGAATAGCTGCAGAAAAGCGAGAAAACACTGCCAGGCTGATGGAGAAGATGCCTCAGATGTTGCTTGATTACAAAAAGCGCAGTGCAGGGCTTGCTAAAGGTGTCGCTTTTCTTACCTTCTCCCTTTCTTTTGCGGTTTTCGACTGGTGGGTGTCTGGTCGATTTTGTTTTTCCGGGTGCCTTCACTTCTTGATGGACTTGGAAAGCATTGAGTGCGTTTCATCTTCCGATGGTTTCGATGAAGATGAAATCCATCAACACCGTACCCTTCACTCGCATCCGCATCCTCTTCTTCACCCTGAAATTTCGGCGTCGAAGCCTCGCAATGGCGCCAACAGTGGCGGTATAACGGGCTCAACTGCCATTGCTCCGGCCACCAGCGTCCACGAGTTGCTTGAGTGCCCCGTCTGCACCAATTCTATGTACCCACCAATCCATCAGTGTCATAATGGGCATACCTTGTGTTCCACCTGCAAAACGAGGGTTCACAACCGCTGCCCCACTTGTCGACAAGAGCTTGGAGACATTAGGTGTCTAGCTCTAGAAAAAGTGGCAGAGTCGCTCGAGCTTCCTTGCAAGTATTACTCCTTGGGATGCCCTGAAATCTTCCCATACTACAGCAAACTTAAGCATGAGGCTATGTGCAACTTCAGGCCGTATACTTGTCCTTATGCTGGATCAGAGTGCTTGGTCGTGGGTGATATTCCTTTCTTGGTTGCTCATCTCAGGGATGATCACAAAGTGGACATGCACACTGGTTGTACGTTTAATCATCGTTATGTAAAATCCAATCCTCGGGAAGTTGAGAATGCCACTTGGATGCTTACTGTTTTCCATTGTTTTGGCCAATATTTTTGTCTCCATTTCGAGGCCTTCCAGCTTGGGATGGCTCCTGTTTACATGGCATTCCTGCGATTCATGGGCGACGAGAGTGACGCTCAGAGCTACAGCTATAGCCTGGAGGTGGGAGGGAGTGGGAGAAAACTAATATGGGAAGGAACTCCGCGAAGTGTGAGGGACAGCCACCGGAAAGTGAGGGACAGCCACGACGGCCTCATAATTCAAAGAAACATGGCGCTTTTCTTCTCCGGCGGAGACAAGAAGGAGCTGAAGTTGAGAGTCACCGGAAGAATTTGGAAGGAACAGCAAAACCCAGATGCTGGAGTTTGTATACCAAACCTTTGCAGTTGA 1671 48.77 MVVSYFMRSFFGIREDRAQATGFILVVVYQHPGSNSIRSSPIDCRPNLFRSSQKDRYIPKDTIIISGYQRNSSMADKAAKSVAKVIGEYQFPWREKLSKYRNELSKGVWGYWELGAWKPLGISARRRARIRKEVLMAGEDWPYDPEKKEMRTKRKGHKCDRIAAEKRENTARLMEKMPQMLLDYKKRSAGLAKGVAFLTFSLSFAVFDWWVSGRFCFSGCLHFLMDLESIECVSSSDGFDEDEIHQHRTLHSHPHPLLHPEISASKPRNGANSGGITGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYTCPYAGSECLVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDAQSYSYSLEVGGSGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 726299 731523 - BLOR06481 Blo15g00087 70487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00087 556 CDD Sina 408 536 - -
Blo15g00087 556 ProSiteProfiles Zinc finger SIAH-type profile. 347 407 IPR013010 GO:0008270
Blo15g00087 556 SUPERFAMILY RING/U-box 284 336 - -
Blo15g00087 556 SUPERFAMILY TRAF domain-like 347 539 - -
Blo15g00087 556 Pfam Seven in absentia protein family 336 535 IPR018121 GO:0005737|GO:0006511|GO:0007275
Blo15g00087 556 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 402 535 IPR008974 GO:0005515
Blo15g00087 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Blo15g00087 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 401 IPR013083 -
Blo15g00087 556 ProSiteProfiles Zinc finger RING-type profile. 294 330 IPR001841 -
Blo15g00087 556 CDD RING-HC_SIAHs 292 330 - -
Blo15g00087 556 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 225 547 - -
Blo15g00087 556 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 225 547 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo07g00335 Blo15g00087 CCT
Blo07g00335 Blo15g00087 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00324 Blo-Chr2:3296730 Blo15g00087 Blo-Chr15:726299 0 dispersed
Blo04g00397 Blo-Chr4:3223679 Blo15g00087 Blo-Chr15:726299 8.62E-18 dispersed
Blo11g00369 Blo-Chr11:3124587 Blo15g00087 Blo-Chr15:726299 5.62E-22 dispersed
Blo13g00641 Blo-Chr13:28959450 Blo15g00087 Blo-Chr15:726299 4.85E-164 dispersed
Blo15g00087 Blo-Chr15:726299 Blo16g00472 Blo-Chr16:18693382 0 dispersed
Blo07g01280 Blo-Chr7:33007117 Blo15g00087 Blo-Chr15:726299 3.43E-154 transposed
Blo15g00107 Blo-Chr15:891287 Blo15g00087 Blo-Chr15:726299 4.44E-61 transposed
Blo15g00087 Blo-Chr15:726299 Blo07g00335 Blo-Chr7:4307006 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00087 K04506 - zju:107414770 641.728