Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00101 ATGGCTTCGAAGCGGATCCTGAAAGAACTTAAGGATTTGCAGAAGGATCCTCCTACATCTTGCAGCGCTGGACCTGTTGCGGAAGATATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATCCATTTTCCTCCAGATTATCCATTCAAGCCTCCCAAGGTTGCATTCAGAACAAAAGTTTTCCACCCAAATATAAACAGCAACGGAAGTATTTGTCTTGATATATTGAAAGAGCAGTGGAGCCCTGCGCTTACAATCTCCAAGGTTTTTGTATTGCTGTCAATATGCTCGCTGTTAACGGATCCAAATCCGGATGATCCGTTAGTGCCAGAGATTGCTCACATGTACAAGACAGACAGGAACAAGTATGAAACAACTGCAAGGAGCTGGACCCAAAAGTATGCAATGGGCTAA 453 44.81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVFVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 853914 855984 - BLOR06495 Blo15g00101 70501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00101 150 Gene3D Ubiquitin Conjugating Enzyme 1 150 IPR016135 -
Blo15g00101 150 CDD UBCc 3 144 IPR000608 -
Blo15g00101 150 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Blo15g00101 150 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 149 IPR000608 -
Blo15g00101 150 Pfam Ubiquitin-conjugating enzyme 5 143 IPR000608 -
Blo15g00101 150 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 147 - -
Blo15g00101 150 PANTHER BNAA01G32320D PROTEIN 3 147 - -
Blo15g00101 150 SMART ubc_7 4 149 - -
Blo15g00101 150 SUPERFAMILY UBC-like 2 149 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00101 - - K06689 fve:101297588 309.301
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01071 Blo15g00101 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00101 Blo-Chr15:853914 Blo16g00456 Blo-Chr16:18106360 4.51E-99 dispersed
Blo02g01112 Blo-Chr2:42178803 Blo15g00101 Blo-Chr15:853914 2.87E-28 transposed
Blo14g00253 Blo-Chr14:2358739 Blo15g00101 Blo-Chr15:853914 1.26E-48 transposed
Blo15g00101 Blo-Chr15:853914 Blo02g01137 Blo-Chr2:42764944 1.84E-108 wgd
Blo15g00101 Blo-Chr15:853914 Blo06g01071 Blo-Chr6:34065200 7.55E-101 wgd
Blo15g00101 Blo-Chr15:853914 Blo09g00044 Blo-Chr9:704628 5.84E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00101 Blo_Chr15 FPKM 1.793844 1.860983 3.970316 3.739165 3.786208 3.852048 3.225489 1.88235 1.957054 1.425379