Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00108 ATGGAACAGAAGCACATTTTGCTATCTGCTTTGGGCGTTGGGGTAGGAGTAGGGGTGGGGCTTGGATTGAGCTCTGCCCAAGCTGTAAGTAAATGGGTAGGAGGAAATAACTCGCCGGATGAGTTTACAGGTGAGCAGATTGAGCAGGAGCTGATGAGGCTGGTGATTGATGGGAAAGCAACCAAAGTTACTTTTGATGAGTTTCCTTATTATCTAAGCGAGCGGACTCAAGTGTTATTGACAAGTGCTGCGTATGTTCATTTAAAGCAGATCGACATTGCCAAGCACACACGCAATCTTTCACCGGCAAGTAGACTTATTTTGCTCTCGGGACCTGCTGAACTTTACCAGCAAATGCTAGCCAAGGCTTTGGCACATCATTTTGAATCGAAATTGCTTTTGTTAGACGTTTCCGACTTTTCTCTCAAGGTAACTACATATTTGTGGATGATCTCTATGCAGAGCAAATTCGGTCGTGTGAGGAAAGAATCGTCCTTCAAGAGGTCCATCTCGGAGGTTACACTTGAAAAAATGTCGAATCTTTTCGGTGCCTTCTCAATCCTTCCTCCGAGTGGGATCACTCAAGGAACAATACGCCGAATGGGGAGTTCTGCGGAAATAAAATTGAGAAGCTATGATGGGTCAGAAAATCCTCCAAAACTTCGTAGAAACGCATCTGCCGCCTCTGATATTAGCAGCTGCTCTTCAAAATCTGCTCCCTCAGATCAAGTTTCCTTGAAGCGCACGAGCAGCTGGTTTTTCGATGAAAAACTGTTTCTGCAATCACTATACAAGGTGCTAGTATCGATTTCTGAAACTGGCTCCATTATTTTGTACCTGAGAGACGTAGAAAAGCTTCTTCTCCATTCACAAAGATTTTACCAAATGTTCAATAAGTTGTTGAACAAACTTTCCATCTCGGTTTTAGTTCTTGGCTCTCGAATGGTCGACCCGGAAGATGATTTCAGAGAAGTGGATGAGCGGATTGGCGTTTTATTTCCATACAACATCGAAATCAAACCCCCGGAAGACGAAACTCATCTTGTCAACTGGAAAGCTCAGCTGGAAGAGGACATGAAGATGATCCAGTTTCAAGATAATAAAAATCATATTGCTGAAGTTCTTGCTGCAAATGATCTCGAATGTGATGATTTGGGTTCGATTTGCCATGCCGACACCATCGTGTTGAGTAATTACATCGAAGAGATCGTTGTTTCTGCGATATCTTATCATTTGATGAACAGAAAAGACCCAGAATATCGAAATGGAAAACTTCTAATATCTTCCAAGAGTTTGTCGCATGGATTGAGCATATTTCAGGACGGAAAAAGCGATGGAAAAGATACTATTAAGCTAGAGACAAAGGTTACTTCTCTCTCTATGTGTGGAGATGAAGCTCTAAGAACAAAAACTGATTCGAAATCCGAGGCGGAAAAATCCGGTTCTGCGGTTAAAAAAGATGGAGAGAATGCAAATCCTCAAAAAGCTCCGGAAGTTGCTCCGGACAATGAGTTTGAAAAACGTATCCGGCCGGAAGTTATTCCTGCAAACGAGATTGGAGTGACATTTGATGATATTGGAGCGATGGACGAGATTAAAGAATCACTTCAAGAACTCGTAATGCTACCTCTCCGAAGGCCAAATCTCTTCAATGGAGGTCTTCTCAAGCCTTGTAGAGGCATTCTTCTATTCGGACCGCCTGGAACGGGAAAGACAATGCTGGCGAAGGCCATTGCCAACGAAGCCGGAGCTAGTTTCATCAACGTTTCTATGTCCACCATTACTTCAAAATGGTTCGGCGAAGACGAAAAGAACGTTAGAGCTCTCTTCACACTCGCTGCAAAGGTGTCTCCAACAATTATTTTTGTTGACGAGGTCGATAGTATGCTCGGGCAGAGGACTCGAGTAGGAGAGCATGAGGCCATGAGGAAGATAAAGAATGAATTTATGACTCATTGGGATGGGCTTTTGACAAAGCCGGGTGAGCGAATTCTCGTTCTTGCTGCCACTAACCGGCCGTTTGACCTTGACGAAGCGATCATCCGTCGTTTTGAGCGAAGCAGAATTATGGTTGGCCTCCCCACGATCGAGAGCCGAGAAATGATTTTGAAAACCCTTCTAGCAAAAGAAAAAGTTGAAAATCTCGACTATAAGGAGCTTGCTACCATGACGGAAGGATTCAGCGGAAGCGATCTAAAGAATTTATGCGTGACGGCTGCTTATCGACCCGTGAGGGAGCTGCTCCAACAAGAGAGAATGAAGGATAAGGAGAAGAAGAAAAAAGAGGCAAACGGAAAAGGCCCGGAAGAGAAGAGCTCAGACGATTCATCCGAAACGAAAGAAGAAGAGAAAGAAGAGCAAGTAATTGTTTTGAGGTCTTTGAATATGGAAGATATGAAACAGGCAAAGAATCAGGTGGCTGCGAGTTTTGCTGCCGAAGGATCGATAATGGCCGAACTAAAGCAATGGAACGACTTGTACGGAGAGGGCGGTTCGAGGAAAAAGCAACAGCTAACTTACTTCCTCTAG 2529 44.05 MEQKHILLSALGVGVGVGVGLGLSSAQAVSKWVGGNNSPDEFTGEQIEQELMRLVIDGKATKVTFDEFPYYLSERTQVLLTSAAYVHLKQIDIAKHTRNLSPASRLILLSGPAELYQQMLAKALAHHFESKLLLLDVSDFSLKVTTYLWMISMQSKFGRVRKESSFKRSISEVTLEKMSNLFGAFSILPPSGITQGTIRRMGSSAEIKLRSYDGSENPPKLRRNASAASDISSCSSKSAPSDQVSLKRTSSWFFDEKLFLQSLYKVLVSISETGSIILYLRDVEKLLLHSQRFYQMFNKLLNKLSISVLVLGSRMVDPEDDFREVDERIGVLFPYNIEIKPPEDETHLVNWKAQLEEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTIVLSNYIEEIVVSAISYHLMNRKDPEYRNGKLLISSKSLSHGLSIFQDGKSDGKDTIKLETKVTSLSMCGDEALRTKTDSKSEAEKSGSAVKKDGENANPQKAPEVAPDNEFEKRIRPEVIPANEIGVTFDDIGAMDEIKESLQELVMLPLRRPNLFNGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERSRIMVGLPTIESREMILKTLLAKEKVENLDYKELATMTEGFSGSDLKNLCVTAAYRPVRELLQQERMKDKEKKKKEANGKGPEEKSSDDSSETKEEEKEEQVIVLRSLNMEDMKQAKNQVAASFAAEGSIMAELKQWNDLYGEGGSRKKQQLTYFL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 901712 906585 + BLOR06502 Blo15g00108 70508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00108 842 ProSitePatterns AAA-protein family signature. 664 683 IPR003960 GO:0005524|GO:0016887
Blo15g00108 842 Pfam ATPase family associated with various cellular activities (AAA) 561 687 IPR003959 GO:0005524|GO:0016887
Blo15g00108 842 MobiDBLite consensus disorder prediction 226 242 - -
Blo15g00108 842 CDD AAA 527 693 - -
Blo15g00108 842 MobiDBLite consensus disorder prediction 467 509 - -
Blo15g00108 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 758 IPR027417 -
Blo15g00108 842 Gene3D - 695 809 - -
Blo15g00108 842 Gene3D - 521 811 IPR027417 -
Blo15g00108 842 MobiDBLite consensus disorder prediction 467 485 - -
Blo15g00108 842 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 842 - -
Blo15g00108 842 Pfam AAA+ lid domain 714 757 IPR041569 -
Blo15g00108 842 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 842 - -
Blo15g00108 842 MobiDBLite consensus disorder prediction 210 242 - -
Blo15g00108 842 SMART AAA_5 557 695 IPR003593 -
Blo15g00108 842 MobiDBLite consensus disorder prediction 748 788 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00108 - - - jre:109010848 1283.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00108 Blo-Chr15:901712 Blo15g00212 Blo-Chr15:2156495 1.30E-14 dispersed
Blo15g00108 Blo-Chr15:901712 Blo02g01127 Blo-Chr2:42570842 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
Vvi17g1 . . Bda06g00701 . . . . Bma12g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g01001 . . . Blo15g00108 . . Bpe07g00915 . . . . . . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00108 Blo_Chr15 FPKM 0.34127 0.0 0.208456 0.346192 0.0 0.897833 0.652259 0.0 0.100526 0.0