Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00109 ATGGCCATTACTGTCGAAGATTTTGCAACCTTGGACCTGGTCCACGACTTTTCCTCCGCTGAAACCTTCTTCGATGACCTCGATCTCTTCTCCAAGGAAAAAGCGACTGTTACCTCTAGGAAACCTTCCGGGGCATCTTCTTTAAGCAACCGCCGTCCGTTGATAAACGTGGAAATTCCCCCGGCCGCCGGGTTTCGTGCAACTTCACATCCCCAGGCTATTGGAGACAGCGACAATCAGAACTATGCTGCTCCAGATCCAAGCCAAACGAGGAATTACAGAGGTGTCCGCCGCAGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGATCCAAACCGGAAAGGGGCGCGAGTGTGGCTCGGAACCTACGAAACCGCCGCTGATGCCGCGAGAGCATACGATAAAGCTGCTTTCAAACTGCGAGGAAGGAAAGCGATTCTGAATTTTCCTCTGGAAGCCGGAAAAGATTCGGAGTCAGAGGCGTCGGCGAGCAGCGGGACAAAGAAGCGGAAAGAGACTGAGATTGAAGAGGGCGAAGTCAAAGAGTGTAAAGTGGTGAAGAAGGAGAATTCGGTAAAGATGGAGAACACGGCTGGCGAAACTTGCTCATCTGCAGTTCTACCTTTGACACCGTCGTACTGGTCGACTGTTTGGGACGCCGACGGGAAAGGGATATTCAGCGTGCCGCTGCTATCGCCCGTCTTCTCCCCGTCCCTCGATGGAATACTCTCATCTTAG 738 53.66 MAITVEDFATLDLVHDFSSAETFFDDLDLFSKEKATVTSRKPSGASSLSNRRPLINVEIPPAAGFRATSHPQAIGDSDNQNYAAPDPSQTRNYRGVRRRPWGKFAAEIRDPNRKGARVWLGTYETAADAARAYDKAAFKLRGRKAILNFPLEAGKDSESEASASSGTKKRKETEIEEGEVKECKVVKKENSVKMENTAGETCSSAVLPLTPSYWSTVWDADGKGIFSVPLLSPVFSPSLDGILSS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 909288 910025 + BLOR06503 Blo15g00109 70509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00109 245 MobiDBLite consensus disorder prediction 72 88 - -
Blo15g00109 245 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 MobiDBLite consensus disorder prediction 156 177 - -
Blo15g00109 245 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Blo15g00109 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 36 232 - -
Blo15g00109 245 MobiDBLite consensus disorder prediction 162 177 - -
Blo15g00109 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 36 232 - -
Blo15g00109 245 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677
Blo15g00109 245 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Blo15g00109 245 MobiDBLite consensus disorder prediction 67 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00109 K09286 EREBP; EREBP-like factor - jre:109002492 176.407
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01136 Blo15g00109 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00256 Blo-Chr7:3123867 Blo15g00109 Blo-Chr15:909288 7.46E-28 dispersed
Blo12g00365 Blo-Chr12:19890863 Blo15g00109 Blo-Chr15:909288 4.09E-27 dispersed
Blo15g00109 Blo-Chr15:909288 Blo15g00111 Blo-Chr15:921240 1.95E-77 dispersed
Blo15g00109 Blo-Chr15:909288 Blo15g00110 Blo-Chr15:912768 1.33E-84 tandem
Blo15g00109 Blo-Chr15:909288 Blo06g01065 Blo-Chr6:34019697 3.81E-104 wgd
Blo15g00109 Blo-Chr15:909288 Blo07g00494 Blo-Chr7:11623085 1.95E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g314 . Blo15g00109 . . . Bpe07g00998 . . . . . Cma15g01360 . Car15g01226 . . . . . . . . . . Cla01g00462 Cam01g0480 Cec01g0470 Cco01g0490 Clacu01g0479 Cmu01g0455 Cre09g2054 . . . . Lsi07g00116 . . . . . Bda06g00768 . . . . Bma12g01182 . . Cmo15g01420 Cma16g00218 . . Car04g00335 . . . . . . . . . . . . . . . . . . . .
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003248 2 0 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 13 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13297 PF00847 AP2 3.70E-14 CL0081 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00109 Blo_Chr15 FPKM 52.129314 54.441685 13.53691 13.15612 8.048931 7.17488 7.06997 163.850998 148.228851 132.741592