Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00166 ATGCGTGAGATTCTTCACATTCAAGGTGGTGAACGCGGAAATCAAACCGGAGCCAAGTTTAGGGAAGTTGTTTGCGCCGAACATGGCATCGTTTCAACCGGTAGGTATAGGGGAACTGATGATTTGCAACGGGAGAGAGTGAACGTTTACTATAATGAAGCGAGTTCTGACCGGTATGTTCCTCGCGATGTGCTGCTGGATCTCGACCCGGGGACTATGGATAGCGTTGGATCTGGTCCGTTTGGGCAGATATTCCGACCTGATAACTTTTTTTTTTCCGCTGCGGGTAATAACTGGGCCAAGGGTCATTATACAGAGGGTGCTGAATTGATCGACTCGTTTCTGGATGTTGTGAGGAAGGAAGCTGAGAATTGTGACTGCTTGCAAGTGTGTGATATTCCTCCAACTGGGTTTAACATGGCGTCCACTTTTATCAGAAACTCTAAGTCAATTCAAGAAATGTTTAGAAGGGTAAGTGAGCAGTTTACTGCCATGTTTAGGAGAAAGGCTTTCTTGCATGGGTACACTGGAGAAGGAATGGATGAGAGCAATGTGAAAGACATGTCTTTGGTGCTCTACCAGAGGTTAGGTAGGCTGGCTTTAAACTGA 609 46.14 MREILHIQGGERGNQTGAKFREVVCAEHGIVSTGRYRGTDDLQRERVNVYYNEASSDRYVPRDVLLDLDPGTMDSVGSGPFGQIFRPDNFFFSAAGNNWAKGHYTEGAELIDSFLDVVRKEAENCDCLQVCDIPPTGFNMASTFIRNSKSIQEMFRRVSEQFTAMFRRKAFLHGYTGEGMDESNVKDMSLVLYQRLGRLALN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1701170 1703610 + BLOR06560 Blo15g00166 70566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00166 202 SUPERFAMILY Tubulin C-terminal domain-like 120 187 IPR008280 -
Blo15g00166 202 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 131 IPR036525 -
Blo15g00166 202 PANTHER TUBULIN BETA-8 CHAIN 130 185 - -
Blo15g00166 202 Pfam Tubulin/FtsZ family, GTPase domain 3 130 IPR003008 GO:0005525
Blo15g00166 202 Gene3D Helix hairpin bin 151 189 IPR023123 -
Blo15g00166 202 PANTHER TUBULIN 1 129 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Blo15g00166 202 PANTHER TUBULIN BETA-8 CHAIN 1 129 - -
Blo15g00166 202 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo15g00166 202 PRINTS Beta-tubulin signature 106 124 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Blo15g00166 202 PRINTS Tubulin signature 91 102 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 PRINTS Tubulin signature 104 128 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 PANTHER TUBULIN 130 185 IPR000217 GO:0005874|GO:0007017
Blo15g00166 202 Gene3D Tubulin/FtsZ, GTPase domain 1 145 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00166 K07375 TUBB; tubulin beta - zab:102061979 278.485
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo09g00113 Blo15g00166 CCT
Blo06g01126 Blo15g00166 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00166 Blo-Chr15:1701170 Blo11g00118 Blo-Chr11:882922 3.61E-25 dispersed
Blo15g00166 Blo-Chr15:1701170 Blo03g00215 Blo-Chr3:4916437 1.06E-24 wgd
Blo15g00166 Blo-Chr15:1701170 Blo06g01126 Blo-Chr6:34730980 4.81E-26 wgd
Blo15g00166 Blo-Chr15:1701170 Blo07g00408 Blo-Chr7:7563671 4.57E-26 wgd
Blo15g00166 Blo-Chr15:1701170 Blo09g00113 Blo-Chr9:2330122 4.58E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g686 Blo06g01126 Blo15g00166 . . . . Bma10g01224 Bma14g02083 . . . . . . . . . . . . . . . . Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 . . . . . . . . . Blo09g00113 . . . Bpe12g00435 Bma08g00325 . . . . . . . . . . Bhi12g00853 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012642 0 0 2 0 0 0 9 0 0 0 0 0 0 0 0 0 1 0 9 0 0 0 1 0 3 1 0 0 0 3 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00166 Blo_Chr15 FPKM 6.316913 6.93136 13.225607 14.261866 8.089157 7.391456 7.775465 8.982268 9.672421 8.718861