Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00172 ATGGGATCTTCCAAAAACTATGCCATATCTCTTCCACAGCGAGTGAATCCTGCTATCTTGGGTTTAATACTTGACTATTGCCGGTTTCATCAAGTATCAGGTCATTCTAATAAGGAGCGCAAAAATTTTGATGAAAAATTCATTCGGATGGACACAAAAAGGTTGTGTGAATTGACATCAGCTGCTGATAGCCTGCAGTTAAAGCCTTTAGTTGATCTAACTAGCCGAGCACTTGCTCGAATAATTGAAGGAAAAACTCCTGAGGAAATCAGAGAAACATTTCATTTACCTGATGATCTAACAGAGGAAGAAAAGTTGGAGCCCCTAAGAAATATAGCTGATGATCCTCGTATACGACTTTTGAATCGATTATATGCTAGAAAGAGAAAGGAGTTAAAAGAACGTGAGAAATTGAAGAATACTGAGATAGAAGAGGAGCATGTGGATGACCGCTCAGTGGATGACCTCCTATCATTTATAAATGGCGAAGTCCGAGATTCAAAGGCAGGCAAAGCCAATAAAACTAAAAAGAAAAATCGTAGAAGAAAAGATCAACCTAAGGATTCTTCTTCGAGTAATAATAATGGTAATCGTAGGAAGGATTTGGATGCTCTTCCTTCTACTAGCCATAATGGCGAGGTCAATGAAACTTCGGAGACATCTTCCAGGGAAACGGTAAAGTTGCACCATTTTGCAGCTGGAAATTTTTCTCCAAGACTTGATTTTGAAGATGGTGACATTGATGATGACTTAGATCCTGCAATGAAAGAGAAACTTGACAGAGAAGTAGAGGATTTTGCTCGAAGATTGAACTCAGATTGGCCAGAAAGAGTGCAGGAATTTCTGTCACTGGGCCAAGAAAGAAATTTTGTTTCAGTAACTATGAATGGCCATGGCTCCACACACAGATATTCAATTTCGATGGCTTCTTCTCCAAAAGGCGCTTCAGAGAGTATTAAGACTGCCAAATGCCCGAACCCAGTGAGGAGGATACGAGTTGTAGCGAAATTGAAGGGGTTGTCAGCTCCGGAATCGGAACTTACAGGTGCAGATTCAGCGAAACCTTGGGTTTTTGTCGATACGAAAAGTGAGGACTCTTCAGGGACTGTCAAAATCACGTTTGGAGATCGATCTTCTGGGTTGAAAGAGTCATACGGATTGGATTATTGCTATCACCAAAATGAAGAGAATGTTAATATTTTTACCAGAGAAATAAAATCTCTAATTTCCGGGGTATTTGATGGCCATAATTCTACTGTTATAGCCTATGGAGCTAAAGGCAGTGGAAAGACCAGCCTGATTCAGGGTTTTAGGGAAAAACCTGGTTTGGCAGCATTATCTATGGTTGATTTTCTCACGATGGCAGAAGAAAAAGGAAAAACAGTTTCGATATCTTTCTATGAAGTTTATTTGGACCATGTATATGATCTATTGGATATAAAGCGGCCACCGGTTTTGTTGTTGGACGATGGACGGGGCAAAATTCAACTTAAGGGACTTTCAAGAGTTCGAGTTAATTCTATTTCAGAATTTTATAAATTATATTTTTTGGGATCTAGCTCACGTAAACCAACACAAAAGATGGCAGCTGAGCTTACTCTTCGAAGCCACAAGGGCTTGATTGTATATTTATCACATGCTAATGAAATGTTTGATACCCGTGACGTCAAGATGAATTTCGTTGACTTGGCCGGTTATGAGGATGCTAGAAGGAAAAATAGTGATGGTCTGAATTTTGTTGAGATTAGTAAAGTTAACAAGTCTATATATGCCTTATTGAATGTTTTATATGCTTTGAACATTAATGAAAGCCATGTTCCATACCGGGAAAGCAAACTTACACGCATGCTACAAGATTCCTTTGAAGCAAATAGCAAAATTGTAGTAGCTGCATGCTTGAACTCATCTTTTTGCCAAGATTCTATTTACATGGAAAATATCTTGAAGACTCACGATAGTAACATTGAGGAAGATATCCAAGTAAAAAAGGCTGTGGAGGAATTTGTTTCCAATGAGATCAGTAGCATAGACGAATTATGCATTGTAGGAGAAGATAGTAATCTCGATAATTTTGCAGTAGAGGAGTTTTCTCTTAGCATGAGCAGTAGTAAAGAAAGATCAAGTACCAAAGAAGAGGACGATAACAAAGATGAGGGATCCACAAGTTTATCGACCTATATCAGTGACCATATTGAGGAAGTTAGTTCAAAAATCGAAAGTGCAAATGAAGAATCGTCTCCTAAAGAAGATGTGAATACAGCAGAGGAGAATTTTAGTTGGCAAATCAATGAGACTAGATCTCCACCATTGAGTGAAAGATTAAGAGACCTTACCAACGAGATGAGATCTTTATATTCTGCAAGACCATTAGCCATGAAGATTCCTCACATTTGTGAAACTCCATCCTTCGATTTACACTCCATTACTTTTGCGGAATATCAAACTCCAGTAAGGAAAGAGAATATTATCGGCAATGATAGACAAGACGCTGCCCATTTTAACAGTCCTTGGGAAAGATTCAGCTCCCGTAGTAAAGGAGTACAGGTTAAACTTTGA 2556 38.69 MGSSKNYAISLPQRVNPAILGLILDYCRFHQVSGHSNKERKNFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNIADDPRIRLLNRLYARKRKELKEREKLKNTEIEEEHVDDRSVDDLLSFINGEVRDSKAGKANKTKKKNRRRKDQPKDSSSSNNNGNRRKDLDALPSTSHNGEVNETSETSSRETVKLHHFAAGNFSPRLDFEDGDIDDDLDPAMKEKLDREVEDFARRLNSDWPERVQEFLSLGQERNFVSVTMNGHGSTHRYSISMASSPKGASESIKTAKCPNPVRRIRVVAKLKGLSAPESELTGADSAKPWVFVDTKSEDSSGTVKITFGDRSSGLKESYGLDYCYHQNEENVNIFTREIKSLISGVFDGHNSTVIAYGAKGSGKTSLIQGFREKPGLAALSMVDFLTMAEEKGKTVSISFYEVYLDHVYDLLDIKRPPVLLLDDGRGKIQLKGLSRVRVNSISEFYKLYFLGSSSRKPTQKMAAELTLRSHKGLIVYLSHANEMFDTRDVKMNFVDLAGYEDARRKNSDGLNFVEISKVNKSIYALLNVLYALNINESHVPYRESKLTRMLQDSFEANSKIVVAACLNSSFCQDSIYMENILKTHDSNIEEDIQVKKAVEEFVSNEISSIDELCIVGEDSNLDNFAVEEFSLSMSSSKERSSTKEEDDNKDEGSTSLSTYISDHIEEVSSKIESANEESSPKEDVNTAEENFSWQINETRSPPLSERLRDLTNEMRSLYSARPLAMKIPHICETPSFDLHSITFAEYQTPVRKENIIGNDRQDAAHFNSPWERFSSRSKGVQVKL 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1757338 1765194 - BLOR06566 Blo15g00172 70572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00172 851 Pfam Skp1 family, dimerisation domain 68 105 IPR016072 GO:0006511
Blo15g00172 851 SUPERFAMILY Skp1 dimerisation domain-like 41 110 IPR036296 GO:0006511
Blo15g00172 851 SMART kinesin_4 328 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 MobiDBLite consensus disorder prediction 735 765 - -
Blo15g00172 851 MobiDBLite consensus disorder prediction 165 226 - -
Blo15g00172 851 PRINTS Kinesin heavy chain signature 606 627 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 PRINTS Kinesin heavy chain signature 415 436 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 PRINTS Kinesin heavy chain signature 557 575 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 ProSiteProfiles Kinesin motor domain profile. 330 659 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 PANTHER KINESIN-LIKE PROTEIN KIN-10C 331 843 - -
Blo15g00172 851 MobiDBLite consensus disorder prediction 735 751 - -
Blo15g00172 851 MobiDBLite consensus disorder prediction 705 719 - -
Blo15g00172 851 MobiDBLite consensus disorder prediction 189 219 - -
Blo15g00172 851 Pfam Kinesin motor domain 376 636 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Blo15g00172 851 Gene3D Kinesin motor domain 314 646 IPR036961 -
Blo15g00172 851 PANTHER KINESIN-RELATED 331 843 IPR027640 GO:0003777|GO:0007018
Blo15g00172 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 638 IPR027417 -
Blo15g00172 851 Gene3D Potassium Channel Kv1.1; Chain A 1 112 IPR011333 -
Blo15g00172 851 MobiDBLite consensus disorder prediction 702 723 - -
Blo15g00172 851 SMART skp1_3 1 67 IPR001232 GO:0006511
Blo15g00172 851 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00172 - - - vvi:100247347 459.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00043 Blo-Chr15:344165 Blo15g00172 Blo-Chr15:1757338 1.17E-07 dispersed
Blo15g00172 Blo-Chr15:1757338 Blo06g00043 Blo-Chr6:1082997 4.21E-33 dispersed
Blo04g01405 Blo-Chr4:34010996 Blo15g00172 Blo-Chr15:1757338 1.59E-59 transposed
Blo07g01179 Blo-Chr7:31657479 Blo15g00172 Blo-Chr15:1757338 4.46E-65 transposed
Blo15g00172 Blo-Chr15:1757338 Blo06g01134 Blo-Chr6:34792600 1.18E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00172 Blo_Chr15 FPKM 9.210417 11.922071 9.977459 9.581345 13.043438 11.025602 15.432232 24.059216 25.698727 24.327957