Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00173 ATGATTCTTAGACTTGTGGGAGCATCAAGTGGTATCGGCACTGAAACTGCCCGTGTTCTTGCATTGCGTGGAGTACATGTAGTTATGGGCGTAAGGAATATGGAAGCTGGCAAAGATGTTCAAAAAGCAATAGTTCAACAGAAACCAACGGCAAGAGTCGATGCCATGGAGTTGGACCTGAGCTCAATTGCATCAGTACAGAAATTTGCTGAAGATTTTCAGTCCTTAGATCTTCCACTCAACATTCTCATTAATAATGCAGGGGTTATGGCCACACCATTCATGCTTTCGAAAGACAACATTGAACTACAATTTGCAACAAACCATTTAGGACATTTTCTTTTGACAAATCTATTATTGGAGACCATGAAAAAAACTGCAGCTGAAAGCAGGAGGGAAGGGAGGATTGTCAATGTTTCATCACGGCGCCATCAATTCTCCTATCAAGAAGGTATTCGTTTCGATAAAATCAACTATCAAGCGAGTTACAACAGCCTATCTGCATATGGTCAATCAAAACTTGCTAATGTTTTGCATGCTTCTGAACTTTCCAGACGGCTAAAGGAAGACGGTATACAGATAACTGCAAATTCAGTTCATCCCGGATTCGTTGCCACCGATCTCTTTCGTCATCTCAACATCATTAATGGTCTTGTAGGCATTTTTGGTAAACATATAGCAAAAGACATTCCACAGGGTGCAGCTACTACATGTTATGTGGCACTGCATCCAGACCTTCGAGGCGTTACGGGGCAGTATTTTAGCGATAGTAACTTAGCGAGAGCGAGCTCACAAGGTAATGATAGAGAACTTGCAAAGAATCTCTGGGATTTTAGTCTCAAATTGATCAATAAAGCTTGA 861 41.35 MILRLVGASSGIGTETARVLALRGVHVVMGVRNMEAGKDVQKAIVQQKPTARVDAMELDLSSIASVQKFAEDFQSLDLPLNILINNAGVMATPFMLSKDNIELQFATNHLGHFLLTNLLLETMKKTAAESRREGRIVNVSSRRHQFSYQEGIRFDKINYQASYNSLSAYGQSKLANVLHASELSRRLKEDGIQITANSVHPGFVATDLFRHLNIINGLVGIFGKHIAKDIPQGAATTCYVALHPDLRGVTGQYFSDSNLARASSQGNDRELAKNLWDFSLKLINKA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1770188 1773502 + BLOR06567 Blo15g00173 70573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00173 286 Gene3D - 5 286 - -
Blo15g00173 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 260 IPR036291 -
Blo15g00173 286 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 6 283 - -
Blo15g00173 286 CDD retinol-DH_like_SDR_c_like 7 276 - -
Blo15g00173 286 Pfam short chain dehydrogenase 5 145 IPR002347 -
Blo15g00173 286 PANTHER RETINOL DEHYDROGENASE 6 283 - -
Blo15g00173 286 PRINTS Glucose/ribitol dehydrogenase family signature 128 144 IPR002347 -
Blo15g00173 286 PRINTS Glucose/ribitol dehydrogenase family signature 78 89 IPR002347 -
Blo15g00173 286 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Blo15g00173 286 PRINTS Glucose/ribitol dehydrogenase family signature 2 19 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00173 - - - vvi:100247484 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01124 Blo-Chr2:42519464 Blo15g00173 Blo-Chr15:1770188 1.30E-130 dispersed
Blo12g00773 Blo-Chr12:26144529 Blo15g00173 Blo-Chr15:1770188 1.27E-23 dispersed
Blo15g00173 Blo-Chr15:1770188 Blo16g00221 Blo-Chr16:5000867 1.40E-78 dispersed
Blo15g00184 Blo-Chr15:1926487 Blo15g00173 Blo-Chr15:1770188 7.50E-13 dispersed
Blo15g00173 Blo-Chr15:1770188 Blo03g00227 Blo-Chr3:5088903 6.01E-134 wgd
Blo15g00173 Blo-Chr15:1770188 Blo09g00075 Blo-Chr9:1363455 1.25E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00173 Blo_Chr15 FPKM 6.629894 8.854827 8.872109 8.703144 11.203997 12.381572 11.920835 11.577586 10.317472 10.722515