Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00177 ATGGTGTCGAAGAATCCAAATCCGCCGGAAGGCTTCTACTTGGATCCGACGGGAGTGGCATTGCCTGGACTCGGACCGTTTACTTCCTCCACTGTGGCTTCAGCTTCGTCGGAGGAGGATCCGTCGAAGAAGGTTCGGAAACCCTACACAATTACCAAGTCTAGGGAGAGCTGGACTGATCCTGAGCATGACAAGTTCCTCGAAGCGCTTCAGCTCTTTGACCGAGACTGGAAAAAGATTGAAGCTTTTGTCGGGTCAAAGACTGTTATACAGATACGGAGCCATGCACAGAAGTATTTTTTAAAAGTTCAAAAGAACGGTGCTAATGAACACTTACCTCCTCCACGACCAAAGAGGAAAGCTGCCCATCCATATCCCCAGAAAGCTTCAAAAAATGTGCTCTCTCAAACATCAGGACCCATCCAGTCAGCATCTGCACTCCTTGAACCTGGATTTATTCTAAGGCCAGACTCCTCGTCAATTCTTATGAATCCTGTTGCTGGTTGTAGTATGTCTTCCTGGACTATTTTTGTTTTTGCGGCAGCAACGGGTTCAAATAACTGCTGCAGTAGCACTGAAAGGACTCCAAGAGCTCGTCCCACAAATGACAGAATTGAACCGGGAAATAATAATCCTGTACAAGTTCTACCAGACTTTACTCAAGTTTACAGCTTTATTGGTAGCGTCTTTGATCCAAACACTTCTTGCCATGGGGAAAAGCTAAAAAAGATGGATCCCATAGATGTTGAAGCTGTGCTTTTATTGATGAGAAACTTATCTATCAATCTCACCAGTCCCGATTTTGAAGATCACAGAAGGTTACTTTCATCATACGAGATTGACACTGGACCCACAAACCAAATTGAAGCAGATAAATACCTCTATGATGAACCCAAAACAGTTGCGATTGTGCACTATCCAAGTGGTTTTATGGACAAGAAGCTTGAAAGCAAGCTTTACATTGGTAACCTTGACTTCAGAATCACAGAGGCTGCTCTTATTAAAATGTTTTTGCCTTACGGGAAGATCGTATCCGAAGAATTTCTGTGGCATACCCGTGGTCCCAAACGGGGAGAGCCACGAGGCTTTGCTTTTATCCAGTATAGCTCGGAGGAGGAAGCTATATTGGCCAAGGAGAAGATGCACGGAAGATTAGTTTGTGGCCGTCCGATAGTGGTGCGTTTAGCTAATGCAAAAAACATGTTCGAGGGCGAAGTGGAGGGGGGTGAGCCGAGTAAAACGGGGCTTAGTAGCAGCATGAGTCGCAGTGCAAGAATAGCTGCAATAAAGAACAAGTTGAAAGCTTTGGAGGAGGGGGAGATGCAGAGCTCTAGTGAGAAGAAGCAGAAGCAAGAGAAGAACAGCTCTTGA 1371 45.37 MVSKNPNPPEGFYLDPTGVALPGLGPFTSSTVASASSEEDPSKKVRKPYTITKSRESWTDPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGANEHLPPPRPKRKAAHPYPQKASKNVLSQTSGPIQSASALLEPGFILRPDSSSILMNPVAGCSMSSWTIFVFAAATGSNNCCSSTERTPRARPTNDRIEPGNNNPVQVLPDFTQVYSFIGSVFDPNTSCHGEKLKKMDPIDVEAVLLLMRNLSINLTSPDFEDHRRLLSSYEIDTGPTNQIEADKYLYDEPKTVAIVHYPSGFMDKKLESKLYIGNLDFRITEAALIKMFLPYGKIVSEEFLWHTRGPKRGEPRGFAFIQYSSEEEAILAKEKMHGRLVCGRPIVVRLANAKNMFEGEVEGGEPSKTGLSSSMSRSARIAAIKNKLKALEEGEMQSSSEKKQKQEKNSS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1803545 1811725 - BLOR06571 Blo15g00177 70577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00177 456 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
Blo15g00177 456 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 53 102 IPR006447 GO:0003677
Blo15g00177 456 CDD SANT 57 100 IPR001005 -
Blo15g00177 456 SMART rrm1_1 318 394 IPR000504 GO:0003723
Blo15g00177 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 391 IPR000504 GO:0003723
Blo15g00177 456 PANTHER PROTEIN REVEILLE 6 3 297 - -
Blo15g00177 456 MobiDBLite consensus disorder prediction 189 212 - -
Blo15g00177 456 SUPERFAMILY RNA-binding domain, RBD 312 401 IPR035979 GO:0003676
Blo15g00177 456 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Blo15g00177 456 PANTHER SWI/SNF COMPLEX-RELATED 3 297 - -
Blo15g00177 456 Gene3D - 314 404 IPR012677 -
Blo15g00177 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 398 IPR000504 GO:0003723
Blo15g00177 456 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 104 IPR017930 -
Blo15g00177 456 SMART sant 54 102 IPR001005 -
Blo15g00177 456 Gene3D - 58 105 - -
Blo15g00177 456 MobiDBLite consensus disorder prediction 437 456 - -
Blo15g00177 456 ProSiteProfiles SANT domain profile. 53 106 IPR017884 -
Blo15g00177 456 MobiDBLite consensus disorder prediction 25 46 - -
Blo15g00177 456 MobiDBLite consensus disorder prediction 105 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00177 - - - rcu:8277093 414.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00378 Blo-Chr2:4255483 Blo15g00177 Blo-Chr15:1803545 8.50E-93 dispersed
Blo15g00177 Blo-Chr15:1803545 Blo07g01411 Blo-Chr7:34132136 2.90E-71 dispersed
Blo15g00177 Blo-Chr15:1803545 Blo06g01137 Blo-Chr6:34831181 4.50E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g748 . Blo15g00177 . . . Bpe07g00927 . . . . Cma02g01078 . Car02g00821 . . Cpe05g00641 . . . . . . . . Cla01g00094 Cam01g0096 Cec01g0096 Cco01g0097 Clacu01g0094 Cmu01g0096 Cre09g2411 . . Cone14ag0061 Cone15ag0064 . Csa05g00109 Chy09g01386 . . . Bda06g00694 . . . . Bma12g01110 . Cmo02g01095 . . . . . . . Bhi12g00787 . . . . . . . . . . . . . Lsi09g00082 . . Cme09g01931
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001829 2 1 2 1 2 2 5 2 2 2 2 2 5 2 2 4 2 3 5 1 2 2 2 2 2 1 2 2 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13304 PF00076 RRM_1 2.70E-12 CL0221 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00177 Blo_Chr15 FPKM 0.0 3.992716 0.0 0.0 8.015343 0.0 0.0 0.0 0.0 0.0