Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00186 ATGGCGAGTCAGCCTCGCATCAATTCTGCTCTTGTAGTTGCGATTCGTATGGCCAAGATGTCAAAGTCAAATGCGGCTGGTGATGCTCAAAAAGTTAATCATTTTGTACACAATCAGCATAGGCCAGATAAGGCATATACTACAGAGCGGGCGCAGAAAAGTGGAAAGGCCAACGCGGCGAGTGGGAAAATATTTGTTACAGTCCCATCTGATCATTTTGGACCTATCCCATCGGAAAATGATCCTGGGAGAAATCAGGGTGTTCTAGTGGGTGAAACTTGGGAGGATAGGTTGGAGTGTCGACAATGGGGAGCTCACTTTCCTCATGTGGCAGGCATTGCAGGTCAGTCAGACTATGGTGCACAATCAGTAGTTCTTTCTGGAGGTTACCAAGATGACGAAGATCATGGAGAGTGGTTTCTCTACACTGGAAGTGGTGGTAGAGACCTTAGTGGTAATAAACGGACGAGCAAGGACCAGTCCTTTGACCAGAAATTCGAGAAAATGAACAAAGCACTCAAAGTTAGTTGCTTGATGGGTTATCCTGTTAGGGTAGTTCGTTCACACAAAGAGAAACGCTCTTCATATGCCCCAGAGAAAGGTTTGCGATATGATGGAGTATATAGGATTGAGAAGTGTTGGAGAAAAGTAGGAGTCCAGGGCTTTAAGGTGTGTAGGTACCTATTTGTCAGATGTGACAACGATCCAGCTCCTTGGACCAGTGATGAACATGGGGATCGGCCTAGACCCTTTCCTGGCATTGCGGAATTGAAAAAAGCAATGGACATCACAGAGAGAAAAGGAAGCCCATCATGGGATTTCAATGAGGAAGATAATTGCTGGATGTGGAAGAAACCTCCACCAGCAAGCAAGAAATCAATTGAAATAGAAGGTTCTGATTCAGGAAAGAGATCTATAAGAGCCATAAGAAAAGCCCAGAAGATGAATGTTAGAGAGAGATTGTTGAAAGAGTTTAGCTGCTCTATCTGCAGACAGGTAATGATTCAGCCTGTGACAACTCCATGTGCTCATAATTTTTGCAAGACATGCTTGGAAGGCCGGTTTGCTGATAAGACATTCATGAGGGATAGAAGCGGAGGTGGAAGAACCCTTCGATGCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAAAATCCTCAGGTAAATAGAGACTTACTTGATGTAATTGAAACACTAAAAAGTCAGAATGAAGAGAATGGCAATTCTGCAGACGAGTCATCTAAGGAGGAAATTACTGAAAAATCCGAGGAACCAAATAAATACAATGAAACTGAGATAGCTCTTCCCAGCCAAGTGAGTCCAAACAGAGCTCAAAAGCGAAAGAAAATCGACAAAAGGGAAGATGCTAATGCAGCCAAAGCTGTAGACTCAGAAGTGGAGAAATCTGGATTATCTGAAGAATGTGATGAATAA 1458 43.14 MASQPRINSALVVAIRMAKMSKSNAAGDAQKVNHFVHNQHRPDKAYTTERAQKSGKANAASGKIFVTVPSDHFGPIPSENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSDYGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKMNKALKVSCLMGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPFPGIAELKKAMDITERKGSPSWDFNEEDNCWMWKKPPPASKKSIEIEGSDSGKRSIRAIRKAQKMNVRERLLKEFSCSICRQVMIQPVTTPCAHNFCKTCLEGRFADKTFMRDRSGGGRTLRCQKNIMICPSCPLDISDFLQNPQVNRDLLDVIETLKSQNEENGNSADESSKEEITEKSEEPNKYNETEIALPSQVSPNRAQKRKKIDKREDANAAKAVDSEVEKSGLSEECDE 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1947080 1951118 + BLOR06580 Blo15g00186 70586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00186 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 439 IPR013083 -
Blo15g00186 485 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Blo15g00186 485 ProSiteProfiles YDG domain profile. 83 231 IPR003105 -
Blo15g00186 485 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 476 - -
Blo15g00186 485 Pfam SAD/SRA domain 83 234 IPR003105 -
Blo15g00186 485 SMART ring_2 327 383 IPR001841 -
Blo15g00186 485 MobiDBLite consensus disorder prediction 408 485 - -
Blo15g00186 485 SMART G9a_1 78 235 IPR003105 -
Blo15g00186 485 MobiDBLite consensus disorder prediction 452 477 - -
Blo15g00186 485 ProSiteProfiles Zinc finger RING-type profile. 327 383 IPR001841 -
Blo15g00186 485 SUPERFAMILY PUA domain-like 57 249 IPR015947 -
Blo15g00186 485 Pfam RING-type zinc-finger 327 373 IPR027370 -
Blo15g00186 485 SUPERFAMILY RING/U-box 320 411 - -
Blo15g00186 485 MobiDBLite consensus disorder prediction 417 436 - -
Blo15g00186 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 476 IPR045134 -
Blo15g00186 485 Gene3D - 54 249 IPR036987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00186 Blo-Chr15:1947080 Blo17g00555 Blo-Chr17:9965473 3.18E-18 dispersed
Blo15g00186 Blo-Chr15:1947080 Blo06g01152 Blo-Chr6:34939690 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00186 K10638 - csv:101220457 731.095