Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00190 ATGGATAGAGTTCTGGTACAGTCAACAAATATTCCGGGGCTAATTTCTGGGCGAAAGCATGGCCAGTTGAGGGGTCCTGGAAATGCAAAATGGGCTGTCAGAATGATGAGTAGTCTAAGGTCTCCTGGATTGAGGATGAAAGGTTTCTCAGGATTAAGGGGTTTTAACGCTGTAGATACCATGGTCAGGCCTGGGCAAGATTTGCATTCCAAAATAACTATTTCTCTTTCTTCTCGTAGACAAAGAAGGGCCAGCAGATGTGTCCCCAAAGCAATGTTTGAGCGGTTTACTGAAAAGGCAATTAAAGTTATCATGCTTGCCCAAGAGGAAGCAAGACGTCTTGGTCACAATTTTGTTGGTACAGAGCAAATCTTATTAGGACTTATTGGTGAAGGCACTGGTATTGCTGCCAAAGTTCTTAAGTCAATGGGAATTAATCTAAAAGATGCTCGAGTGGAAGTGGAGAAAATAATTGGAAGGGGTAGTGGATTTGTAGCTGTAGAGATTCCGTTCACTCCTCGTGCTAAACGCGTGTTGGAGCGCTCCTTAGAGGAAGCCCGGCAACTAGGCCATAACTATATTGGATCTGAGCATTTGCTTCTTGGATTACTTCGTGAGGGTCAGGGTGAGGGTCAGGGTGAGGGTGTTGGTGTTGCAGCCCGTGTTCTTGAAAATTTTGGCGCTGACCCCAGTAACATCCGGACTCAGGCAAGGAATGCATTCTGA 726 45.59 MDRVLVQSTNIPGLISGRKHGQLRGPGNAKWAVRMMSSLRSPGLRMKGFSGLRGFNAVDTMVRPGQDLHSKITISLSSRRQRRASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLERSLEEARQLGHNYIGSEHLLLGLLREGQGEGQGEGVGVAARVLENFGADPSNIRTQARNAF 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1971275 1972428 + BLOR06584 Blo15g00190 70590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00190 241 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Blo15g00190 241 Pfam Clp amino terminal domain, pathogenicity island component 183 236 IPR004176 -
Blo15g00190 241 ProSiteProfiles Clp repeat (R) domain profile. 93 241 IPR004176 -
Blo15g00190 241 PANTHER CHAPERONE PROTEIN CLPC2, CHLOROPLASTIC 55 237 - -
Blo15g00190 241 SUPERFAMILY Double Clp-N motif 94 237 IPR036628 -
Blo15g00190 241 Gene3D - 92 241 IPR036628 -
Blo15g00190 241 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 55 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00190 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - mnt:21388672 347.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00207 Blo-Chr3:4814693 Blo15g00190 Blo-Chr15:1971275 3.12E-14 transposed
Blo07g00467 Blo-Chr7:10055916 Blo15g00190 Blo-Chr15:1971275 3.49E-14 transposed
Blo15g00190 Blo-Chr15:1971275 Blo06g01154 Blo-Chr6:34954213 2.64E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017324 0 0 1 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00190 Blo_Chr15 FPKM 62.785519 67.991722 63.104198 65.97551 30.993662 33.222103 27.835711 65.067741 68.638779 66.93515