Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00201 ATGGCGAGAAGAAGACGTCTCCAACTGAGCTACTCCTCCGAGGAAGAATCTATTCCTGAAATCGATGCACTATATGAGGAGCATGAGAATCCAATTCAACCTCCCGAACCTGAAAATTTTGATTTTCTTCCCAACGTTTCTGATTCAATTCAAATATCCGACGGCGACGGCGACGGCGGAGAAGACTTCGTCGACGTCTCTGACCATTTTTCGCCTCCAGCGGATCTGAACACGGATTCTTTTTCGCGTTTGCATTCACAGGGCATTTCGCCGACCTCTGGCGAAGCCTCTAATGAGGCTTCAGGCTGTCCTATAAGCGAGTTTCTTTCGTCGTTGGGTTTGAAGTTGAAGAGAGAGTGGTTAGATGCTTGCATCCACGGTTTAGAGAGCTCAATACCGAACTTTACTAGCCTTGATATTGCGGCGAAAGCGAAAATGTGTTTCTCGCAGTTTTTGATTTCTGATATGAATTGTGCCGGTGCCGGTATCCTCCCTGAAAATGTTCATTCTATGCATCTTGTTAATTTCCCAGGGCCGTTTGTGTTGCAGGTTGATGAGACAGTCAACATCAGTTGCCCGCTCCGAGGTAGATACCAGGCAGCAGCAGCAGCATCTTCGCTCAAGAGGTGCCTCAAGCTGTCCCTGACTGATGGGGTTCAACGTGTGTTTGGCATGGAATACAGGCCCATTAGGGCTCTCGAAGTTCTTGGTCCAGCTGGGTTAAAGGTTGTTATTCGCAATGTACACATACGGCATGGACTTTTAATGCTAGTTCCTGAATCCTTGGAAGTTCTAGGAGGACTAGTTTTGGAACTTGATGCAGCACGGCTGCGGCTTGTTGAAGAAGTAAACAAGCCAGCCAGGGGAAGAAGAACCAGGACTGAAGGGATTCCTCTTTTGGCAACCAGGGCAACTCTTGCTGCATGGCCGTCTAACTACATAAATAGTAATGAGCGTGTTGATAATGCAGTATTGGAAGGTCGTACAGCCTCTGAGCAAAGTAACTCTGGTATTCGATTCTGTTTAATTGTTTTAGCGAACACTTTTTTGGCATATATTAAAATTTTGTGGTATATTGTGTTAGTTCTGCCATGCACTAATACAATTGAGAGGACAAGTGACGAGGTTTCTGCCCCTGATGCCGAAGAAAGTGCTGTCCTAAATCTATCTTCAAATTCTGTTGCGCATGTTGATGAAATCCTCATAGTATCTGTACCTAGTGATGAAGACAATAGCTTGCCTAATCCGTCACCAAATGTTGTTTTGACATCAGAAGCTGTAAATATGATCGTTGATGATTGCCCACTCGTATCATCAGTGAATCAAGAAGTCCCTTTCATGTACTTAGCTAGTTTGTCTGCTAAGTGGGCTGCAACAAGCAAGAAATCTTCTTCAGTTCAGGGGAAAATTAAGTGCTTCTTGACTGGTGTAAAGGGATTTCAGTATAAGCAAAGGACAACATACGAACTTAGGGTATTTGTTGATGATGGTAGCCTCATCTCAGAGATACTAATTGATCACAACGTTGTACATAAAGCAGTAGGACATTCTCCCAGAGATGTTACTCTAGCTCTTTCATCTACCAACATGAAAATAGCTAGTGATATGAAGGAGAACCTGAGACAGTTCCAAGTTTTCCTAGTTAACTTTGAGGGCATGATGCTCATTGAAATGAATAATACATCCCCTCTTCCAATTGCACTTGAGCTGAACCAGGGATGTCCTGAGTCTGATGCTTGGTTGCTTTTTAGAAGACTCAAATCTTCAAGGACTTCTCAAAGAGCAGCGCATCTGCCATTAGATCCCATAGATATATCTCCTTGA 1824 43.97 MARRRRLQLSYSSEEESIPEIDALYEEHENPIQPPEPENFDFLPNVSDSIQISDGDGDGGEDFVDVSDHFSPPADLNTDSFSRLHSQGISPTSGEASNEASGCPISEFLSSLGLKLKREWLDACIHGLESSIPNFTSLDIAAKAKMCFSQFLISDMNCAGAGILPENVHSMHLVNFPGPFVLQVDETVNISCPLRGRYQAAAAASSLKRCLKLSLTDGVQRVFGMEYRPIRALEVLGPAGLKVVIRNVHIRHGLLMLVPESLEVLGGLVLELDAARLRLVEEVNKPARGRRTRTEGIPLLATRATLAAWPSNYINSNERVDNAVLEGRTASEQSNSGIRFCLIVLANTFLAYIKILWYIVLVLPCTNTIERTSDEVSAPDAEESAVLNLSSNSVAHVDEILIVSVPSDEDNSLPNPSPNVVLTSEAVNMIVDDCPLVSSVNQEVPFMYLASLSAKWAATSKKSSSVQGKIKCFLTGVKGFQYKQRTTYELRVFVDDGSLISEILIDHNVVHKAVGHSPRDVTLALSSTNMKIASDMKENLRQFQVFLVNFEGMMLIEMNNTSPLPIALELNQGCPESDAWLLFRRLKSSRTSQRAAHLPLDPIDISP 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2081169 2084775 + BLOR06595 Blo15g00201 70601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00201 607 Pfam RecQ mediated genome instability protein 112 277 IPR013894 -
Blo15g00201 607 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 445 586 IPR032199 GO:0000166
Blo15g00201 607 SMART DUF1767_2 106 199 IPR033472 -
Blo15g00201 607 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 393 589 - -
Blo15g00201 607 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 100 337 - -
Blo15g00201 607 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 100 337 - -
Blo15g00201 607 MobiDBLite consensus disorder prediction 81 100 - -
Blo15g00201 607 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 393 589 - -
Blo15g00201 607 MobiDBLite consensus disorder prediction 30 69 - -
Blo15g00201 607 Gene3D - 155 281 IPR042470 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00201 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 - jre:109008508 590.497
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00201 Blo_Chr15 FPKM 2.863654 3.434012 8.900273 7.612382 20.532566 23.390434 23.477545 6.756495 5.755784 6.579299