Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00213 ATGATGAAATTACGTGAGAAGCCATGGAAGCTACTGCATCATAACTCTGAACTCATCAAAGCTAAGATCGCCATCGCCGTCAAGATCGAAGCAGCCAATCATGATCCCACATTCTGCAATCAACTTCTTTTCTCCGAGTCTACTGAGCATCCTCTTCAAATCACCGGGAACGCCGGTGGAGATGGTGTTGGAGTTGTGAAAGACGAGGCTATGCAAACTGCTGATGCTGTGGCCTTACCTGTAGCTGAGGGTACGACTCCGATGATGGAAAAGCCAGGTAGTTCATTTCCTCCGTGTAGTTGCTTTTTTTGCAAGCCATGCCCAAATTTTAAGACGTGCACGCCTTGGTGTAGGCTAATCTCACAATTTGATCAGAATCCGAATATTCTCATTTCCTCTACGAATTTCACAATTGGATCAAGCAAAAGTAGTAATTTTCCATCAAAGGATGAAACTGTTAGTGGCACTCTATGCAAAATCATGCAAATGCAGGAGGAGGGAATCACAATAGCCGTGCTAGAGACTGTAGGGAGCATTGGATCAGTGCTTGTAAATAGGATTTTCCAGCAACTTACAACTGAATCTCGAAATGGGAAGTCTCTTCACCTTAAACGGAGGACAGCTGATTCCTCAGCTGTGGCTGGGGCTTCTATATTGGCATCTTTGCCAATCCCTAGGATTGAGAGTAAAATCCATCAAGGGACTGATTTGCCTTCTCATTCTGCTGCTCGTGACGCTACAGAACTTGAGATTGATCTTCTTGAAGCCAACTCAACTCCAAATTTAGGAGGCCATGAAGCTGCAGATGTGGAAACAATCAACAAGAATCTTTCTCCTGATAGAAAAGTGAACTCTGGTGTAGAGGCAGGCCATGATGAACTTTCTGGGGTGAATGATTTGGTTTTGGAAGAAAGAAACCAGTGGACTGGAGATTTCCAGCCAGAATCAACTTCGGGCACGTCTTCCCTGCATCAAATGTTGTTAGAAGACATTGTTGCGGGAATAGTTGATGCCACAGACTTAGGAGTTTCTTTTGAAAGGTTCCCATATTATTTGAGGATCATAGAACTATACCAAGAGAGGTTGGCTGAGGCACTTGCTAAGTACTATAGATACTTGGATGAGGACGGGGACGGGAAAATCTCGCCGGGAGAGCTGAGAAGCAGGCTGGGTCTGATGGGGAAAGAGCTGCTGCAGAAGAAGGCGGAGGCGGCGGTGGAAACCTTGGATTCCGACGGGGACGGGATGATGGGATTTGACGATCTGGTTGGGCTGATGGAAATAGGGGGAGAGGAAGAGAAGTTGAAGGATCTGAAACAGGCTTTCGGAATGTACGATGAAGAAGGGAGTGGCTTCATCACGCCCAAGGGCTTGAAGAAGATGCTGAGTAGACTCGGCGAGGAGAATTCGATTGCAGAGTGTGGGATCATGATTGGCTGTCCTGCTTTAAAGAGTGGTGGTTGGATCTCCGGTAAACTTCCTTTTCTTCCTCCTATCGGTTTCAATATCTTCTTCGATTCAGTCACTGAACAAGGTATGGAAAACATTGAGAATTTACTCAATATCTATAACCAGCTTCGCAGTTGCACCAACCCTGATGAGGTGGAGAAGTTGAAAAAGAGTTTGAGAGAGTCTATTCATATTAAGAGGAACGAAAGTGATAAAAATAGTGGAAGCGAAGAACTTGGAATTCGAAACGTGGAAAAGTGTAGAATTTCATCTCTTGCGGACAAGAGTAGAGAGGTGAATAAATTGATTAAAGAAGTGAAGGAACTCGCAGAGATAGGCAAGTTTGGTGATGATCTTACAATTGAAGGGGAGGAAATTCAAGTTAAATTTCCCACAAGTAACTTAGTAGGTGAAAAGTTTGAGGATTATATGAATCAACGTGACATTTATGGCTCTGTTTATTGGGTCACGGTTTCAAGAGATTGTAGCATTCAAAAGTTGCAAACTGATGTTGCAAGAAAAATGAAAGTAGATATTTCAAATGAGCTAGACGAATTAGAAAGAGCTGGAATACTTGCAGAAATGTTGAAAAGAAAGAAAAAAATCATTTTAATTTTGGATGATATGTGGTCTGATTTTGATTTGAATAAGGTGGGATTAGGAATTCCAAAAGAAGTTGGATATTAA 2136 42.93 MMKLREKPWKLLHHNSELIKAKIAIAVKIEAANHDPTFCNQLLFSESTEHPLQITGNAGGDGVGVVKDEAMQTADAVALPVAEGTTPMMEKPGSSFPPCSCFFCKPCPNFKTCTPWCRLISQFDQNPNILISSTNFTIGSSKSSNFPSKDETVSGTLCKIMQMQEEGITIAVLETVGSIGSVLVNRIFQQLTTESRNGKSLHLKRRTADSSAVAGASILASLPIPRIESKIHQGTDLPSHSAARDATELEIDLLEANSTPNLGGHEAADVETINKNLSPDRKVNSGVEAGHDELSGVNDLVLEERNQWTGDFQPESTSGTSSLHQMLLEDIVAGIVDATDLGVSFERFPYYLRIIELYQERLAEALAKYYRYLDEDGDGKISPGELRSRLGLMGKELLQKKAEAAVETLDSDGDGMMGFDDLVGLMEIGGEEEKLKDLKQAFGMYDEEGSGFITPKGLKKMLSRLGEENSIAECGIMIGCPALKSGGWISGKLPFLPPIGFNIFFDSVTEQGMENIENLLNIYNQLRSCTNPDEVEKLKKSLRESIHIKRNESDKNSGSEELGIRNVEKCRISSLADKSREVNKLIKEVKELAEIGKFGDDLTIEGEEIQVKFPTSNLVGEKFEDYMNQRDIYGSVYWVTVSRDCSIQKLQTDVARKMKVDISNELDELERAGILAEMLKRKKKIILILDDMWSDFDLNKVGLGIPKEVGY 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2173917 2183822 + BLOR06607 Blo15g00213 70613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00213 711 Pfam NB-ARC domain 623 707 IPR002182 GO:0043531
Blo15g00213 711 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Blo15g00213 711 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Blo15g00213 711 SUPERFAMILY EF-hand 363 489 IPR011992 -
Blo15g00213 711 SMART efh_1 365 393 IPR002048 GO:0005509
Blo15g00213 711 SMART efh_1 401 429 IPR002048 GO:0005509
Blo15g00213 711 SMART efh_1 437 465 IPR002048 GO:0005509
Blo15g00213 711 CDD EFh 401 463 IPR002048 GO:0005509
Blo15g00213 711 Gene3D - 430 511 - -
Blo15g00213 711 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Blo15g00213 711 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 71 186 - -
Blo15g00213 711 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 197 352 - -
Blo15g00213 711 Gene3D - 298 428 - -
Blo15g00213 711 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Blo15g00213 711 CDD EFh 371 426 IPR002048 GO:0005509
Blo15g00213 711 Coils Coil 575 595 - -
Blo15g00213 711 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Blo15g00213 711 Gene3D - 616 707 IPR027417 -
Blo15g00213 711 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 71 186 - -
Blo15g00213 711 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 197 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00213 - - - csv:101214766 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01012 Blo-Chr4:13252524 Blo15g00213 Blo-Chr15:2173917 1.16E-23 dispersed
Blo04g01013 Blo-Chr4:13266073 Blo15g00213 Blo-Chr15:2173917 7.87E-27 dispersed
Blo15g00213 Blo-Chr15:2173917 Blo19g00165 Blo-Chr19:6574318 3.97E-43 dispersed
Blo15g00212 Blo-Chr15:2156495 Blo15g00213 Blo-Chr15:2173917 5.85E-159 tandem
Blo15g00213 Blo-Chr15:2173917 Blo06g01180 Blo-Chr6:35261045 6.38E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g134 . . Bda06g00735 . Bpe12g00494 . . Bma12g01078 . . Cma10g00335 Cma11g00041 Car10g00318 Car11g00037 Sed08g1476 . Cpe04g01609 Bhi02g00531 Tan09g2361 Cmetu09g1801 . Hepe09g0057 . . Cla06g01734 Cam06g1925 Cec06g1975 Cco06g1979 Clacu06g1881 Cmu06g1823 Cre06g2638 Cone2ag0967 Cone16ag0022 . . . . . . . Blo15g00213 . . . . . . . Cmo10g00363 Cmo11g00042 . . . . . . . . . . . . . . . . . . . . Lsi06g01634 Csa01g00065 . Cme02g02057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00213 Blo_Chr15 FPKM 10.719106 11.206711 10.655635 10.151402 9.099347 9.287435 9.389894 12.042455 10.470472 10.623465