Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00215 ATGGAGTCACTGTTTCTTCTCTACGAATCCGCTTCTGGATATGCTCTATTTCACGCTCATGGACTTGACGAGATCGGCCAGAACACCGAAGCTGTTCGGAATTCCATCGCCGACCTTAACCGTTTTGGCAAGGTCGTTCAGCTCAGAGCTTTTCATCCTTTTGAGTCGGCTCTCGACGCGCTTAACCAGTGCAACTCGGTCTCCGAAGGGGTAATGACTGATCAGCTAAGGAGTTTTCTGGAAATCAATCTCCCAAAGGTGAAAGAAGGTAAAAAAGCAAAGTTCATTTTGGGACTAGCCGAACCAAAGATTGGCTCGCACATATTAGAAGAGACTAAAATACCTTGCCAAAGCAATGAGTTTGTTCTAGAGATACTCCGTGGGGTGCGATTGCATTTTGATAGGTTTATCAAGGACCTTAAGCCTGGTGACTTGGAAAAGGCGCAACTTGGTCTGGGCCACAGCTATAGCAGAGCTAAGGTTAAGTTCAACGTTAATCGAGTTGATAATATGGTGATTCAAGCGATTTTCCTTCTAGATACTCTTGACAAGGATGTTAATTCTTTTGCCATGCGAGTCAGAGAGTGGTACTCATGGCATTTTCCTGAGTTGGCCAAGATTGTCAATGACAATTATCTCTATGCTAAAGTTGCAAAATATATTGAGGACAAATCAAAGTTGTCAGAAGAAAATATTCAGGGCTTGGTTGACATACTCGGTGACGAAGACAAGGCAAAAGAGATTGTTGAAGCTGCCAAGGCATCTATGGGACAGGATTTGTCTCCAATTGACTTGATTAATGTCCAACAGTTTGCACAGAGGGTAATGGATCTATCTGAATATAGGAAGAAGCTTTTCGATTATCTTGTCGCTAAAATGAATGACATTGCACCAAACTTGGCCTCTTTGATTGGTGAAGTTGTTGGAGCACGTTTAATATCTCATGCCGGAAGTCTCACAAATTTGGCCAAATGCCCTTCATCTACCCTTCAGATTCTTGGTGCAGAGAAGGCACTCTTTAGGGCACTGAAAACCAAAGGAAACACGCCAAAGTATGGCCTGATATTCCACTCATCGTTCATTGGTCGAGCATCTGCCCGGAACAAAGGTCGAATGGCTCGTTATCTTGCAAATAAGTGTTCAATTGCATCTCGTATAGATTGTTTTGCAGATCATAGCACTACTGCCTATGGGGAGAAACTTCGAGAACAAGTAGAAGAGCGACTTGACTTCTACGACAAGGGAATTGCCCCTCGCAAAAATATTGATGTGATGAAAGCTGCAATGGAAAGTGCACAAGACCAAGGGACAGAGATGGAAGTAGATGTTGCTACCGAAGCTTCGGCCAAGAAAAGTAAGAAAAAGAAGTCAAAACCTGCTGCAATGGAAGATAGTGAACCAATCGCTGAGGAAAAACCGGCTGCTAAAACAATTGATGATGCTAACGTGGATGGAAAATCCGAAAAGAAGAAAAAGAAGGAGAAGAGAAAACTGGAAATGGAGCAGCAGCAACAACAGAACTCGGAAAACTTGAACGGGAACAGAGTTAATGGTCTGGAGAATGGAAAAGCCAAGAAGAAAAAGAAGGGCAAAGAAGAAAATGGAGAGGTTGAATTAACTGCCACCACCGACGGCAAAAAGAAGAAGAAAAAGAAGGTAAGAAGTGAAGATAGTGAATAG 1680 42.92 MESLFLLYESASGYALFHAHGLDEIGQNTEAVRNSIADLNRFGKVVQLRAFHPFESALDALNQCNSVSEGVMTDQLRSFLEINLPKVKEGKKAKFILGLAEPKIGSHILEETKIPCQSNEFVLEILRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDVNSFAMRVREWYSWHFPELAKIVNDNYLYAKVAKYIEDKSKLSEENIQGLVDILGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLFDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFADHSTTAYGEKLREQVEERLDFYDKGIAPRKNIDVMKAAMESAQDQGTEMEVDVATEASAKKSKKKKSKPAAMEDSEPIAEEKPAAKTIDDANVDGKSEKKKKKEKRKLEMEQQQQQNSENLNGNRVNGLENGKAKKKKKGKEENGEVELTATTDGKKKKKKKVRSEDSE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2214009 2217000 + BLOR06609 Blo15g00215 70615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00215 559 MobiDBLite consensus disorder prediction 503 517 - -
Blo15g00215 559 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Blo15g00215 559 MobiDBLite consensus disorder prediction 457 502 - -
Blo15g00215 559 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Blo15g00215 559 PANTHER BNACNNG34340D PROTEIN 4 552 - -
Blo15g00215 559 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Blo15g00215 559 Gene3D - 142 299 - -
Blo15g00215 559 MobiDBLite consensus disorder prediction 432 559 - -
Blo15g00215 559 Gene3D Nop domain 300 412 IPR042239 -
Blo15g00215 559 Coils Coil 483 511 - -
Blo15g00215 559 SMART NOSIC_2 171 223 IPR012976 -
Blo15g00215 559 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 4 552 IPR045056 GO:0030515|GO:0031428|GO:0032040
Blo15g00215 559 SUPERFAMILY Nop domain 164 413 IPR036070 -
Blo15g00215 559 MobiDBLite consensus disorder prediction 520 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00215 K14564 NOP56; nucleolar protein 56 - vvi:100267928 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01183 Blo-Chr6:35294514 Blo15g00215 Blo-Chr15:2214009 0 dispersed
Blo11g00474 Blo-Chr11:4288171 Blo15g00215 Blo-Chr15:2214009 1.69E-97 dispersed
Blo13g00509 Blo-Chr13:26522096 Blo15g00215 Blo-Chr15:2214009 1.14E-21 dispersed
Blo15g00215 Blo-Chr15:2214009 Blo10g00333 Blo-Chr10:5017291 3.72E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00215 Blo_Chr15 FPKM 9.185463 8.350594 9.370012 9.117121 5.788656 5.272667 5.521175 8.332914 7.605285 7.280478