Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00217 ATGGGCGGCCCAAAGCGGACAATATCTATCAGTGAGGTGGCCGGGGCTTATCAAAGGGTTTCATTCTTGAATGGTTTCCAGGGACAGTTGTCCAAGCAGAGAAGGTTTTACCCTCTCTGTCTCTTCACTAATGTAGTGGTTAAATATTGTGATAGTAATTCCTGCCCAGCCAATGAATTGTTTTTCCTATATATGCAGCTCGATTCGATGCTTGAAAAGAAGGGAGTGAAAGTTGATAAGGTGCTGAACTTTGCCATCGCCGATGCAATCTTGGAGGAGAGAATTACTGGACGGTGGATTCACCCTGCTAGTGGACGAAGCTACCACACAAAATTTGCACCTCCCAAGACTCCTGGTGTTGATGATGTCACTGGAGAGCCTCTGATTCAACGGAAGGATGATACTGCAGCCGGCCTTAAGTCCCGGTTGGAGGCATTTCACAAGCAAACCGAACCAGTAGTAGATTATTATTCGAAGAAGGGGATTGTTGCTAATCTTCATAAAACTCAACTTCTTCCTCCCTTTGGGGGTGGGAATCGAATTGAACGGAATTTATCATCAACTTTAGTTTTGGTTATTGAATTTCCAACCCGGCTTCTTTATCATGTGCAGTTACTGGAATATAATTATATGGCCCCAACTGTTCCTATAGAGTTCACCGGACAGAAGGAATCAAGAAAGTACTCCCTTTCGCAGACAATGGGTAAATCTAGGAAATATTCCAAAGGGCTTTCATCCGGTTTTGTCTCAGATTCCCGTCATGTTGTAGAGACTGTTGATGAATCAGAAGGTTTTGGAAGTTCAGCGCAGGTTGAAGATGCGGCAATTGCTACAGAAAATTCACGTGCTCCTAAAAGGAAGTGTATTAGTTTGAATAGTTGTGATAATTTTGGTGTTGGTGTACAAGTATTGTCTGTGTCAAAAATGATTTCTTCTGAAAGGAAGGATTTGGAATTGAAGTTGAAGATGGAACTTGAGCAGGTTCGGGCAATCCAAATGAAAATTTCTAGTGTAGTCCCTTTGTCCGCATCAAGTTATATTGAGAGCTATAACGTTGGACAGAGAGGAGCCTCTTTAGAGAATTTCAATAGGCCGTTTCAAGTCTCGGCTGCTAAGGGTAAGAAACGTCCAAATGGTACTCAAGCCAAAAAAAACAATTTTGGACCAGCCAAACCTGCTGCTGCAGTGAGTACGTCAAATGCCACATTAGTCAAGCAGTGTGAAACGCTATTGAATCGTTTAATGTCTCATCAGTATGCTTGGATTTTCAACACCCCAGTCGACGCGGTGAAGTCGAACATTCCTGATTATTTCACTGTCATAAAGCATCCAATGGACTTGGGAACAGTGAAGAGCAACATAGTTATGGACAAATATAGAGATTTAATGGATTTTGCTGCAGATGTGAGGCTTACTTTTTCAAATGCAATGACTTACAATCCTCCAGAAAATGATGTTCATTTCATGGCAAGGTCACTTAGTAAATATTTTGAAGTGAGATGGAAAGCTATAGAGAAGAAGCTTCCATTAACCATTAACGCGCCTTCAAGAGTTCAAATGGACACTGAAGCTTCTTTAAGTGTACCACTTTCAACTAATGAGCAAATTACTACAGATAACTTTTATGGTCAATCAGATATTAATAGGAAACCTATGACTGATGAAGAAAAGCACAAGTTTAGTTTGGAGTTGGAGTCTTTATCTACAGACTTGCCTCAAAGCATAATTACATTCTTGAAGGAGCACAGCACTAGTTCGGGTCAGAACAGCGAGGATGAGATTGAAATTGACATTTATGCACTCAGTGATGATACGTTGTTCACTCTGAGGAAGCTTTTGGATGATTGTTTACTAAAGCAAAAAACCCAAGTGAAGGCTGGATCTTTTGATTTGGAGCGTCAGAATGAATCAGGGATTCACAATTCATCCATAGAAGCATGTAAAGGAATTGACCCAATGGACGAGGATGTGGATATTGTTGGTGGAAATGATCAACCAGTGTCTATCTATCTTCCATCGGAAATAGATAATGTAGTTTGTCATCGTACCAAAGGCAATAGCTCATGCACTTCAAGTGGGGACGCGGGGTCTTCATCAAGTGATTCTGGCTCAGGCAGTTCATCTGAAAGTGAGTCTGAAGATGCCAATGCTGTAGGTCCTAGCAGCGTCACAAAGGTAAATTTATTTTGGAAAAAGTCCAAAGAGAAGAATGATGTACAAATATCAAATTTTTTCAAGCGTGGAACATGCATGCAAAATTGCAAATATTTGAATGGTTTTACAAATACTATCTGCCCGTTACAGGAAATCATTGAGTTCAGTTGGGTGATTCAGAAAATCCTACTTGTGAGTCTTGGCTTTGTATTGCATGTTAAAATTCAGATAACAATCGTGAGTCTTTTCCTGCCTGGTGTAATTTATTATGACTGTTTTATAAAGCTTGTTCTGTATAATTATGCAGATTCAGAAAATGAGGTTGGTGTAATTGAGCCCAACTTTCAGCCAGAATCAGTTTCTTTAAAGGCAGATACTCAACAAGAGGTGGATAGCGCTCCATCCGAGAGGCAAGTCTCGCCTGAAAAACTATACCGTGCTGCTCTATTGAGGAATCGTTTTGCTGATACCATACTTAAAGCTCGAGAAAAAGCATTTGAAAAGGGTGACAAACTTGACCCAGAAAAACTTCGAATAGAGAGAGATGAACTTGAAAAGCGGCAAAAAGAAGAAAAAGCAAGACTCCAAGCGGAAGCGAAGGCTGCAGAAGAGGCAAGAAGAAAAGCTGCTCGAGAAGCTGCAGCTGAAGCCAAAAGGAAGAGGGAGCTAGAGAGAGAAGCTGCACGTCAGACATTGTTAAAGATGAAAAAGACTGTTGAAATCAATGGGACTAGTCTGTTTATGGAAGATCTGGAAATGCTCAGGGTTTCCCATGACGAAGTTTTACCAACTTCTGGAGAGCAGACAAGCCCGGATCATTTATCGAGTGTGTTGGGTAGTTTTAAGCTACAAGGGAGCAGTAACCCCTTGGAACAGCTCGGCTTGTACATGAAAAAGGAGGATGGTGATTTTGACGATGATGAAGGGGAACAACGTGAGGGTTCTGAACCGGGAAATAACAACATCGAGGAAGGGGAAATTGATTAA 3141 41.2 MGGPKRTISISEVAGAYQRVSFLNGFQGQLSKQRRFYPLCLFTNVVVKYCDSNSCPANELFFLYMQLDSMLEKKGVKVDKVLNFAIADAILEERITGRWIHPASGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAGLKSRLEAFHKQTEPVVDYYSKKGIVANLHKTQLLPPFGGGNRIERNLSSTLVLVIEFPTRLLYHVQLLEYNYMAPTVPIEFTGQKESRKYSLSQTMGKSRKYSKGLSSGFVSDSRHVVETVDESEGFGSSAQVEDAAIATENSRAPKRKCISLNSCDNFGVGVQVLSVSKMISSERKDLELKLKMELEQVRAIQMKISSVVPLSASSYIESYNVGQRGASLENFNRPFQVSAAKGKKRPNGTQAKKNNFGPAKPAAAVSTSNATLVKQCETLLNRLMSHQYAWIFNTPVDAVKSNIPDYFTVIKHPMDLGTVKSNIVMDKYRDLMDFAADVRLTFSNAMTYNPPENDVHFMARSLSKYFEVRWKAIEKKLPLTINAPSRVQMDTEASLSVPLSTNEQITTDNFYGQSDINRKPMTDEEKHKFSLELESLSTDLPQSIITFLKEHSTSSGQNSEDEIEIDIYALSDDTLFTLRKLLDDCLLKQKTQVKAGSFDLERQNESGIHNSSIEACKGIDPMDEDVDIVGGNDQPVSIYLPSEIDNVVCHRTKGNSSCTSSGDAGSSSSDSGSGSSSESESEDANAVGPSSVTKVNLFWKKSKEKNDVQISNFFKRGTCMQNCKYLNGFTNTICPLQEIIEFSWVIQKILLVSLGFVLHVKIQITIVSLFLPGVIYYDCFIKLVLYNYADSENEVGVIEPNFQPESVSLKADTQQEVDSAPSERQVSPEKLYRAALLRNRFADTILKAREKAFEKGDKLDPEKLRIERDELEKRQKEEKARLQAEAKAAEEARRKAAREAAAEAKRKRELEREAARQTLLKMKKTVEINGTSLFMEDLEMLRVSHDEVLPTSGEQTSPDHLSSVLGSFKLQGSSNPLEQLGLYMKKEDGDFDDDEGEQREGSEPGNNNIEEGEID 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2229844 2238963 + BLOR06611 Blo15g00217 70617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00217 1046 ProSiteProfiles Bromodomain profile. 415 487 IPR001487 GO:0005515
Blo15g00217 1046 Pfam Adenylate kinase 66 161 - -
Blo15g00217 1046 PANTHER TRANSCRIPTION FACTOR GTE10 820 1028 - -
Blo15g00217 1046 Coils Coil 314 334 - -
Blo15g00217 1046 MobiDBLite consensus disorder prediction 980 1009 - -
Blo15g00217 1046 PANTHER TRANSCRIPTION FACTOR GTE10 235 723 - -
Blo15g00217 1046 PRINTS Adenylate kinase signature 148 162 IPR000850 GO:0005524|GO:0006139|GO:0019205
Blo15g00217 1046 PRINTS Adenylate kinase signature 131 146 IPR000850 GO:0005524|GO:0006139|GO:0019205
Blo15g00217 1046 MobiDBLite consensus disorder prediction 687 719 - -
Blo15g00217 1046 PANTHER TRANSCRIPTION FACTOR GTE8 235 723 - -
Blo15g00217 1046 SUPERFAMILY Microbial and mitochondrial ADK, insert "zinc finger" domain 97 134 IPR036193 GO:0004017
Blo15g00217 1046 Pfam Adenylate kinase, active site lid 98 133 IPR007862 GO:0004017
Blo15g00217 1046 SMART bromo_6 396 506 IPR001487 GO:0005515
Blo15g00217 1046 Hamap Adenylate kinase [adk]. 1 186 IPR000850 GO:0005524|GO:0006139|GO:0019205
Blo15g00217 1046 MobiDBLite consensus disorder prediction 369 391 - -
Blo15g00217 1046 PANTHER TRANSCRIPTION FACTOR GTE8 820 1028 - -
Blo15g00217 1046 Pfam Bromodomain 407 490 IPR001487 GO:0005515
Blo15g00217 1046 MobiDBLite consensus disorder prediction 917 940 - -
Blo15g00217 1046 Gene3D - 545 623 IPR038336 -
Blo15g00217 1046 MobiDBLite consensus disorder prediction 980 1046 - -
Blo15g00217 1046 Gene3D - 385 514 IPR036427 GO:0005515
Blo15g00217 1046 PRINTS Bromodomain signature 434 450 IPR001487 GO:0005515
Blo15g00217 1046 PRINTS Bromodomain signature 450 468 IPR001487 GO:0005515
Blo15g00217 1046 PRINTS Bromodomain signature 418 431 IPR001487 GO:0005515
Blo15g00217 1046 PRINTS Bromodomain signature 468 487 IPR001487 GO:0005515
Blo15g00217 1046 CDD ADK 67 163 IPR000850 GO:0005524|GO:0006139|GO:0019205
Blo15g00217 1046 SUPERFAMILY Bromodomain 398 509 IPR036427 GO:0005515
Blo15g00217 1046 Gene3D - 63 172 IPR027417 -
Blo15g00217 1046 Pfam Bromodomain extra-terminal - transcription regulation 551 614 IPR027353 -
Blo15g00217 1046 CDD Bromo_plant1 405 501 IPR037377 -
Blo15g00217 1046 ProSiteProfiles NET domain profile. 542 624 IPR027353 -
Blo15g00217 1046 Coils Coil 899 945 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00217 - - - cic:CICLE_v10018939mg 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01181 Blo-Chr6:35272365 Blo15g00217 Blo-Chr15:2229844 9.50E-81 dispersed
Blo06g01182 Blo-Chr6:35281215 Blo15g00217 Blo-Chr15:2229844 3.94E-57 dispersed
Blo11g00631 Blo-Chr11:6515044 Blo15g00217 Blo-Chr15:2229844 2.78E-44 dispersed
Blo14g00867 Blo-Chr14:31980639 Blo15g00217 Blo-Chr15:2229844 1.79E-17 dispersed
Blo15g00217 Blo-Chr15:2229844 Blo15g00581 Blo-Chr15:12339255 6.91E-37 dispersed
Blo15g00217 Blo-Chr15:2229844 Blo02g00900 Blo-Chr2:34753856 4.45E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00217 Blo_Chr15 FPKM 2.100271 1.669354 2.667079 2.74636 2.010137 3.547023 2.397707 0.0 1.874573 2.36881