Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00218 ATGCAAACTATTGTAAACCCTCTCTATTTCTTCCCAATTCCAAAACCCTTATCCCCTTTCCCCTTCTCCACACCTCACTCGCATTCCCACCGCCTTCCATGGCGTCCTCTCCCGTTCCCTGCCAACTCCATTGGAAATCCTGTGTTTTCACGCTGCTCCACTCCCCATTGTTTCCGCTCCGACGAGTTTCCCGTCGACGACGATTTTCTCGAGAATTTCGGTTCCAAAGACAAAGAAACGGAGGACGAGGCTCGCAGGCGTAACTGGATCGAGCGCGGTTGGGCTCCATGGGAGGAGGTTCTCACTCCGGAAGCTGATTTTGCGAGAAAAAGTTTGAATGAAGGCGAGGAAGTACCGCTTCAGTCGCCGGAGGCAATCGAAGCGTTCAAAATGTTAAGCCCTAAGTACCGGAAAGAGAAGATGGAGGAGATGGGGTTGACTGAGGATGACTATTATCGGAAGCAATTTGAAATAAAGGGGGAGATACCAGAACCATTAAAGACTGTGTGGGCAAGACCGCTCGTTTTGCAGCTTGTGCCGCCTCGGGATTGGCCACCAAGGGGTTGGGAGGTAGATAGGAAGGAGTTGGAATTCATGAGGGAAGCACATAAGCTGCAGGCGGTGAGGGTGGATTTGGAGAAGTTGGATAGCATGGAGAAGGCTGAGATCGGTGATATGTGTTTCGATAGGTATAAGGTGTTCTTAAAGCAGTATAAGGATTGGGAAGTTGCCAATAGGGATAGACTGGAGGAAGAGTCCTACAAGTACGACCAAGATTACCATCATGGCAGAAGGAAAAGAGGCAAGGACTACAAAGAAAACATGTATGAACTTCCATTTTACTATCCTGGACAAATTTGTCAAGGAAAAGTGATTGCTTTACACCTTTATCAAGGAGCATTTATAGACATTGGCGGTGTATATGATGGGTTGGTCCTTATCAAAGGTAATGATTGGTATTGGATTCGCCATCATATAAAAGTTGGCATGCCTGTCCTTGTTGAGATTTTGGCAAAGCGAGATCCTTATCGGTTTCGGTTTCCTATTGAATTGCGGTTTGTCCATCCTAATATAGATCACCTCATCTTTAATAGATTTGATTATCCTCCAATATTTCATCTTGATGAAGAAACTAGTCAAGATGAATTACGGCGTGATTGTGGAAGACCTCCTATTCCAAGAAAAGATCCAGGAACAAAACCAGAAGAGGAACCTTTGCTGTCAAATCATCCTTATGTGGACAAGCTGTGGCAGATGCATGTTGCGGAGCAAATGATAATGGATGATATGGAAGTTAATCCAGAAAAATACAAGGGTAAAAGGCTGTCGGAATTAGCAGACGAGGAAGATTTCGATGAAGCAAACAGTGTTCAATATACCAAAGTACAATATAAGAAGAGCATGATACCAAAAATGATTCTGAATACGAGTTTGAAAGACCTTGATTTGGAAGCGGCTTTCGCCGAGCGTGAGATTCATAACAAACTAAAAAGAGAGGCAGATGAAAGAGGAGAGCATTACAAAATCGATAAGCTGAGAAGGAATCATGAAATGGATGAGTATGACCTCATTCATTGGCGACGATCTTTCGAAGAACGAGAAGCTTTGCTCAGAGATATCAGCTGCCGGCAGACTCTGGGGCTGCCATTGGAGGAGCCCGGAAGGTACAAAGATGCCAGTTACTTTGGAAAGGATCAATACGACCCAGAGAATCCTCTATATAGGCATGATTATTGGGGTGAACCCAAGAACTCAGAAAAGAGCAGGGAAGATAGGATGACAGATACCCACAACAAATCCATTGTGGGCAAAGGGGTTGTCTGGTACGAAATGTCATACGAAGATGCCATTAAGCAACGAATGGAGCGAGAAGCCCGAGCTAAGGAAGCAAAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGATGAGGATGAAGACGACGACGACGACTTTGATTTCAGCATTTTAAATGACTCAACCGAGGATCTCACCAACCAGCCTCATGTAAATGGAACTGAAACATACAGAATGTCGGATGATGACATATTTGAAGATTGA 2055 44.62 MQTIVNPLYFFPIPKPLSPFPFSTPHSHSHRLPWRPLPFPANSIGNPVFSRCSTPHCFRSDEFPVDDDFLENFGSKDKETEDEARRRNWIERGWAPWEEVLTPEADFARKSLNEGEEVPLQSPEAIEAFKMLSPKYRKEKMEEMGLTEDDYYRKQFEIKGEIPEPLKTVWARPLVLQLVPPRDWPPRGWEVDRKELEFMREAHKLQAVRVDLEKLDSMEKAEIGDMCFDRYKVFLKQYKDWEVANRDRLEEESYKYDQDYHHGRRKRGKDYKENMYELPFYYPGQICQGKVIALHLYQGAFIDIGGVYDGLVLIKGNDWYWIRHHIKVGMPVLVEILAKRDPYRFRFPIELRFVHPNIDHLIFNRFDYPPIFHLDEETSQDELRRDCGRPPIPRKDPGTKPEEEPLLSNHPYVDKLWQMHVAEQMIMDDMEVNPEKYKGKRLSELADEEDFDEANSVQYTKVQYKKSMIPKMILNTSLKDLDLEAAFAEREIHNKLKREADERGEHYKIDKLRRNHEMDEYDLIHWRRSFEEREALLRDISCRQTLGLPLEEPGRYKDASYFGKDQYDPENPLYRHDYWGEPKNSEKSREDRMTDTHNKSIVGKGVVWYEMSYEDAIKQRMEREARAKEAKEEEEEEEEEDEDEDDDDDFDFSILNDSTEDLTNQPHVNGTETYRMSDDDIFED 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2239675 2244653 - BLOR06612 Blo15g00218 70618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00218 684 ProSiteProfiles S1 domain profile. 284 352 IPR003029 GO:0003676
Blo15g00218 684 Coils Coil 478 498 - -
Blo15g00218 684 MobiDBLite consensus disorder prediction 622 684 - -
Blo15g00218 684 MobiDBLite consensus disorder prediction 631 655 - -
Blo15g00218 684 MobiDBLite consensus disorder prediction 573 596 - -
Blo15g00218 684 MobiDBLite consensus disorder prediction 379 405 - -
Blo15g00218 684 Coils Coil 613 647 - -
Blo15g00218 684 MobiDBLite consensus disorder prediction 656 672 - -
Blo15g00218 684 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 10 47 670 IPR044967 GO:0000427|GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00218 - - - mcha:111006930 1095.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g156 . . Bda06g00739 . . . . Bma12g01073 . . Cma10g00074 . Car10g00064 . Sed08g0047 . . Bhi02g00547 Tan09g2351 Cmetu02g1227 . Hepe09g0066 . . Cla06g01727 Cam06g1917 Cec06g1967 Cco06g1971 Clacu06g1873 Cmu06g1815 Cre06g2630 . . . Cone19ag0195 . . . . . Blo15g00218 . . Bpe07g00880 . . . . Cmo10g00073 . . . . . . . . . . . . . . . . . . . . . Lsi06g01622 Csa01g00074 Chy02g02645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011208 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00218 Blo_Chr15 FPKM 5.313088 6.168108 1.036875 0.841631 1.455725 2.714712 1.483323 3.552861 3.346028 3.599821