Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00239 ATGGCTGATGGACCAAGGCATTCTCTTGACGTTCCCATCTCAAAAACTCTTATTGCTCTTAGGAGAGTGAGGTCGCTGAGAGATCCTTCAACTACTTCCATGAGCAGATTCTCTGGGTTGGCTGATTATGTCAATTGGGATACCAATTCAAATGATGAAATTTCTACGCATTTCTTGAGCGATTCCGGGGAAGACGAAGCTGATAATTATGGTCTATCAAGGTCGAAGAATTTATGTCTTCCTAGAGAAGAAAACAACTGTGGTGACGATCTGACAAACTCTAAGTGGATCTTGTGCAATGGGGATGATGAAGCAATGAAGGATGTGGATTCGATTGTCAATCCATATCGAACACGAAAATCCCGATGTAGGAATCAGGTCCAACCATCTCATTCAGAAGGTGATACAGGTAGTCAAGTTAGCAGCCCTTTCCCATCTACCATTAGCGGTGTGTCAAAACTGATCTCTTCCCCATTTTTGAACAAAGAGGTCGATGCTATCAATCGAAACCACAACGGCTGTGGAATCGGCAGCTGCTGGTCGAAAACACTGAAATTCAGGGAACCGAATCTTTCTTCCGAGATTGAAGGTTATCCATTGTTGTGCACAAATGTGGACGAGACAGCACTCTACGGGCGGGGCCAGAGGGATTTGAAACATGTCAGCAAAGAAAGACTAGCATATCAAGTAACTCCGAGGAATTTGTGTCAGAAATTCCGGCCGACATCTTTCGATGACTTGGTGGGACAAAACGCAGTGTCGAAATCTCTTTTGGGCGCCGTCTTGCTTGCAAGGATTTCTTCTTTCTATATCTTCTTTGGGCCCCGAGGGACTGGAAAGACCTCTGCCTCGAGGATATTTGCTGCAGCCCTAAATTGCCTCTCACTCGAGGAGCAGAGACCGTGTGGTTTATGCCAAGAATGTGCTTCATTTTTTTCTGGAAGAAGCAGAGATATACAGGAAGTAGACTCCCTCAGAATCAATAAAACAGACAGGATTAGGTCTCTCATTAAGAATGCCGCTACTCCTTCCCCGTCTTCCCGGTTTAAGGTTTTCATTATTGACGAATGTCATATGTTGCGCGAGGATGCATGGGCCACATTGTTGAGTAGCCTCCATAAATTTTCTCGACATTCTGTCTTTCTGATGATCACTCCAGATCTTGACCGGCTGCCTAGATGCGTGATTTCGCAGTCCCAGAGGTTTTATTTTCCGAAAATAAGAGATGCTGATATTGCGAGCAGATTGGGAAAAATTTGCCTCGAAGAACGTCTAGATTTCGATCTGGATACTCTAGACTTCATTTCTTCGAAATCGAACGGTTCGATCAGGGATGCTGAAATGATGCTTGAACAGTTGAGCTTGCTCGGTAAAAAAGTCACTCTGTCACTGGCTCATGAACTTATCGGCATTGTTTCGGATGAAGAATTGCTTGATTTGCTGGACTTGGCTTTGTCGTCGGACACTTCTAATACTGTAATTAGGGCGAGAGAGTTGATGAGATCAAGGATTGATCCAATGCAGCTAATTTCCCAGTTGGCTGATCTCATCATGGACATTCTTGCTGGTAAACATGAAGAATCTTCTTCTGAAGTTAGAAGAAAGTTCGTCACTAACCACTCCACTGAAGCAGATGCGCAGAAACTGAGCCACGCATTGAAAATCCTCTCAGAAGCTGAAAAACAACTAAGAATTTCGAAGAATCAAACGACTTGGCTTACTGTTGCTCTACTCCAGTTAAGCTCAATGGAGTCATTCCCAACAAATTCGAATGAAACGAAGTTTTGTTTGAGAAATTCCAACGACAAAGATGCAGAAGGCGATTTTTGCAGCAGATCTTCTGCTGGGGAGAACTTGAAACATCTTGTGTCTGATGAATGTAAAGAAACATTGGAATCCATATGGAAGAGAGCTGCAGAATTACCCCAGTCAAATTCTACTATGAAATTCCTTAGAAAACGAGGGAAATTATCCGCTCTTTCGATTGATCGAGGTCTAGCAATGGCTGAATTGGAATTTTCCCATCCCGACCATGTAGCTCGAGCCGAGAAGTCCTGGAAACTGATTGCGAGTTCGCTTCAGGCCGTCTTGGGGTGTAATGTGGAGATCAGAATCAATCTATCAGAATGTGACTCTGATTTGAAGAAATACCCAAAAATTTGGGGACTATCTTTCAGCCTTTTTGGTTGCTCTCGCAGAAGTAGGCGGACGAGAACCCGGGTGATCACCGAATGTTGTAGTGATTTTGGGTTTAACGATTATTACAATTCCGACAAGCTTTCTGCGAGGGAAACGCCATTGCTGACTTGCTCTTCTTGTTGTGGTCCTGTGGACTCCAATCACAAACTGGCGGGGGTTAGAAATAGCGATGGGAATGCATTGAGCACGAGGATGATAACATCCAAAGAGGATGTGTTGAAGACGCGAGGAGGCAGATGCCGATGCCAATGCCAGTGCCGGTTATTATTGGACGGAGAAGAAGAGCCAGGCTGCTTTCCTAGAACTCGAAAGTAG 2514 44.39 MADGPRHSLDVPISKTLIALRRVRSLRDPSTTSMSRFSGLADYVNWDTNSNDEISTHFLSDSGEDEADNYGLSRSKNLCLPREENNCGDDLTNSKWILCNGDDEAMKDVDSIVNPYRTRKSRCRNQVQPSHSEGDTGSQVSSPFPSTISGVSKLISSPFLNKEVDAINRNHNGCGIGSCWSKTLKFREPNLSSEIEGYPLLCTNVDETALYGRGQRDLKHVSKERLAYQVTPRNLCQKFRPTSFDDLVGQNAVSKSLLGAVLLARISSFYIFFGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCQECASFFSGRSRDIQEVDSLRINKTDRIRSLIKNAATPSPSSRFKVFIIDECHMLREDAWATLLSSLHKFSRHSVFLMITPDLDRLPRCVISQSQRFYFPKIRDADIASRLGKICLEERLDFDLDTLDFISSKSNGSIRDAEMMLEQLSLLGKKVTLSLAHELIGIVSDEELLDLLDLALSSDTSNTVIRARELMRSRIDPMQLISQLADLIMDILAGKHEESSSEVRRKFVTNHSTEADAQKLSHALKILSEAEKQLRISKNQTTWLTVALLQLSSMESFPTNSNETKFCLRNSNDKDAEGDFCSRSSAGENLKHLVSDECKETLESIWKRAAELPQSNSTMKFLRKRGKLSALSIDRGLAMAELEFSHPDHVARAEKSWKLIASSLQAVLGCNVEIRINLSECDSDLKKYPKIWGLSFSLFGCSRRSRRTRTRVITECCSDFGFNDYYNSDKLSARETPLLTCSSCCGPVDSNHKLAGVRNSDGNALSTRMITSKEDVLKTRGGRCRCQCQCRLLLDGEEEPGCFPRTRK 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2501906 2504790 - BLOR06633 Blo15g00239 70639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00239 837 Pfam DNA polymerase III subunits gamma and tau domain III 461 591 IPR022754 GO:0003887
Blo15g00239 837 SMART AAA_5 266 426 IPR003593 -
Blo15g00239 837 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 234 580 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Blo15g00239 837 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 80 804 - -
Blo15g00239 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 457 IPR027417 -
Blo15g00239 837 SUPERFAMILY post-AAA+ oligomerization domain-like 471 588 IPR008921 GO:0003677|GO:0006260
Blo15g00239 837 CDD AAA 248 406 - -
Blo15g00239 837 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 80 804 - -
Blo15g00239 837 CDD HLD_clamp_pol_III_gamma_tau 407 470 IPR045085 -
Blo15g00239 837 Gene3D - 409 470 - -
Blo15g00239 837 Pfam DNA polymerase III, delta subunit 250 407 - -
Blo15g00239 837 Gene3D - 225 405 IPR027417 -
Blo15g00239 837 MobiDBLite consensus disorder prediction 120 145 - -
Blo15g00239 837 Gene3D - 471 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00239 - - - mesc:110616705 819.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00158 Blo15g00239 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01189 Blo-Chr2:43614515 Blo15g00239 Blo-Chr15:2501906 6.32E-109 dispersed
Blo03g00276 Blo-Chr3:5653368 Blo15g00239 Blo-Chr15:2501906 2.34E-102 dispersed
Blo14g00870 Blo-Chr14:32111032 Blo15g00239 Blo-Chr15:2501906 2.44E-90 dispersed
Blo15g00239 Blo-Chr15:2501906 Blo18g00180 Blo-Chr18:1717491 1.23E-06 dispersed
Blo13g00158 Blo-Chr13:5352606 Blo15g00239 Blo-Chr15:2501906 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g878 . . . . Bpe12g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0193 Cone19ag0187 . . . . Blo13g00158 Blo15g00239 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004154 1 1 4 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00239 Blo_Chr15 FPKM 5.24069 5.315686 0.885744 1.14035 1.155524 1.105868 1.255337 2.050052 1.923715 1.506286