Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00240 ATGGAATTTGCTCGTCGCCCACCCATTTCTCCCACTAACTTTCCCCGTGATTTTTCCGTCATCTATTCCAAGTCTCAGCTCCTGGAGCTGCCGGATCCTGACGTCCATATCGTCACTTCCGGTGGACTTTGTATCCCTGCCCACTCCAGCATTCTGGCCTCCATCTCGCCGGTATTGGAGAGCATCATCGAAAGGCCGCAAAAGCGCCATAGCTTTACCAAAGCGATTCCGATTCTCTGTGTCCCGGACAACGCTGTCATTGCCTTAGAGAATCTAGAGAAGTACGGGATTCATCTTCTGGCGCTGGCCCATGTCTATCTGGTCCCAGAGCTGAAGCAGAGATGCGTAAAGGACATAGCTTTTCATCGCCTGACGGTCGACAATGTCGTCGATGTGCTTCAACTGGCTAAGCTCTGCGACGCACCAGATCTCCATGTCAAGTGTATGAAGTTGATCTTCAACAACTTCATGGCTGCCCAGAAAACAGAGGGTTGGAAATTCTTACAAAACAACGATCCCAGGTTGGAGCTAGAAGTCCTTGAGCTCATCGAGGAAGCTGAATTGAGGAAGAAGAGATCAAGAAAGGAGGAGACAAGCTTGTATCTGCAACTAAACGAAGCCATGGAAGGATGCGCAACCATTGGACCGCACGATACAGACCCCAACCAGAAGAGGCAGCCCTGCAAACACTTCTCCACCTGTTATGGTCTTCAGATTCTGATCAAACATTTTGCCGCCTGTACGAGAAGGATCAACGGCCGATGTCTCCGCTGCAAAAGATTGTGGCAGCTTTTGAGACTTCACTCTTCAATCTGTGACCAATCTGAGGATTGCAAAGTCCCTCTCTGCAGCAGGCGATTTAAAGAGAGAAAGCTGCAAGAGAAAAGGAAAGATGAAGCGCGGTGGAAGCTGCTAGTGAGGAAGGTAACGTCCGCCAAAGCCTTAAACTCACTGTCTCTGCAAAAGAGGAGCAGAGAAGGTGCAAGTGAGGACTCCATTGGCAGCCAAGGAATTAGAAGCCTGAGATTGCAGAACGTGGATTCGAACCATTTTCAGATCTGTAGAGCGCTGAAACCCTTGAGCAAAGAAATGGCGAAGACGGCTGCAGAGGGCGTCGCTGCTGTCAACCCAGCCATCGATCGGGATTCGGATATTCCTGATGATCCGACCCATAAGTTTGCTCAGTTCGGAGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGCGTCGTTGGGGTGGTGAAGACCGAAGTCGGATACTCCCAAGGTCACGCGCCGGATCCAACCTACAGACAAGTCTGCTCCGGAAATACAAACCACGTTGAGGTGGTTCGTATGCAATTCGACCCGGAACTCTGCCCATATGCAAACCTCCTCTCTGTCTTCTGGGGCCGCCACGACCCCACCACCCTTAATCGCCAAGGCGGAGACGTGGGTACTCAATACCGATCGGGAATATACTATTACAGCGAGGAACAAAGGAGCTTGGCGGAGGAATCGAAGAGGGCGAAGCAATCGGAGATGGAAGGGCAGGAGATTGTGACGGAGATTGTTCCGGCGAAGAGATTTTACAGGGCGGAGGAGTACCATCAGCAGTATCTGGAAAAGGGTGGTAGGAGAGGCTGCAAACAGTCTTCTGAGAAGAATTGCAAGGATCCCATCAGATGCTATGGCTAA 1680 51.37 MEFARRPPISPTNFPRDFSVIYSKSQLLELPDPDVHIVTSGGLCIPAHSSILASISPVLESIIERPQKRHSFTKAIPILCVPDNAVIALENLEKYGIHLLALAHVYLVPELKQRCVKDIAFHRLTVDNVVDVLQLAKLCDAPDLHVKCMKLIFNNFMAAQKTEGWKFLQNNDPRLELEVLELIEEAELRKKRSRKEETSLYLQLNEAMEGCATIGPHDTDPNQKRQPCKHFSTCYGLQILIKHFAACTRRINGRCLRCKRLWQLLRLHSSICDQSEDCKVPLCSRRFKERKLQEKRKDEARWKLLVRKVTSAKALNSLSLQKRSREGASEDSIGSQGIRSLRLQNVDSNHFQICRALKPLSKEMAKTAAEGVAAVNPAIDRDSDIPDDPTHKFAQFGAGCFWGVELAFQRVVGVVKTEVGYSQGHAPDPTYRQVCSGNTNHVEVVRMQFDPELCPYANLLSVFWGRHDPTTLNRQGGDVGTQYRSGIYYYSEEQRSLAEESKRAKQSEMEGQEIVTEIVPAKRFYRAEEYHQQYLEKGGRRGCKQSSEKNCKDPIRCYG 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2516486 2526421 + BLOR06634 Blo15g00240 70640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00240 559 Gene3D Peptide methionine sulphoxide reductase MsrA 379 559 IPR036509 GO:0008113
Blo15g00240 559 SMART TAZ_2 198 284 IPR000197 -
Blo15g00240 559 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 23 333 IPR044513 -
Blo15g00240 559 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 23 333 - -
Blo15g00240 559 Pfam Peptide methionine sulfoxide reductase 395 541 IPR002569 GO:0008113
Blo15g00240 559 Gene3D - 123 191 - -
Blo15g00240 559 TIGRFAM msrA: peptide-methionine (S)-S-oxide reductase 393 541 IPR002569 GO:0008113
Blo15g00240 559 SUPERFAMILY Peptide methionine sulfoxide reductase 388 544 IPR036509 GO:0008113
Blo15g00240 559 Gene3D Potassium Channel Kv1.1; Chain A 9 120 IPR011333 -
Blo15g00240 559 MobiDBLite consensus disorder prediction 537 551 - -
Blo15g00240 559 CDD BACK 125 168 - -
Blo15g00240 559 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 391 549 IPR002569 GO:0008113
Blo15g00240 559 Pfam TAZ zinc finger 222 283 IPR000197 -
Blo15g00240 559 Coils Coil 490 510 - -
Blo15g00240 559 MobiDBLite consensus disorder prediction 537 559 - -
Blo15g00240 559 SUPERFAMILY TAZ domain 226 287 IPR035898 -
Blo15g00240 559 Gene3D TAZ domain 192 313 IPR035898 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00240 - - - zju:107418254 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00889 Blo-Chr4:10201814 Blo15g00240 Blo-Chr15:2516486 2.48E-29 dispersed
Blo09g00169 Blo-Chr9:5641258 Blo15g00240 Blo-Chr15:2516486 4.23E-41 dispersed
Blo15g00240 Blo-Chr15:2516486 Blo05g00838 Blo-Chr5:30274994 4.19E-28 dispersed
Blo15g00240 Blo-Chr15:2516486 Blo07g00502 Blo-Chr7:12494962 3.52E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13311 PF01625 PMSR 1.70E-59 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00240 Blo_Chr15 FPKM 0.0 0.0 0.0 0.0 1.365139 1.110737 1.643556 0.0 0.143404 0.190909