Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00241 ATGCCGCTATCGCAGGAGGAGATTGGAGAGGCGGCGATAAAACACGCTCTCAAAGCTTTGCGTAAGCGCCACTTGCTCGAAGAAGGCGCTCATGGTCCTGCTTTTCTCGCCCTCTCCAGGCCTATTGCTCTGCTGGGCTTAGAATGGAAGGAGAAAGTGGAGAATTTGGAGATGGAACTGCAACAGTGTAACAAAGCACAATCTCGATTGTCTGAGCAGCTTGTTGTGGAAGTAGCCGAAAATAGAGCTTCTAGAGCTTTAATTACAGAGAAAGACGTAATGATCGATAAAATGCAGAAAGAGTTGACATTCACAAGGGAAGAATGTTCCGAGTTAAAGACGGACTTAGAAGAGAAATTCAAAGCATTGGAATTGATTTTGGTTGAGAACAAGGAAATAAAGGCAGAACTAGAAGCAATGATAGTGAAGGCCAGAAATGCAGAGGCAGAAAATAGGATGTTGGTTGATCGATGGATGTTGCAAAAGATGCAGGACGCTGAACGTCTTAATGAGGCAAATGCACTTTATGAAGATATGATCGAGCGCCTCAAGGCCAGTGGCTTGGAGAAACTTGCTCGACAACAAGTAGATGGTGTAGTTCGCCAAAGTGAAGAGGGTGCTGAGTACTTCGACTCAGTTATTCCATCCACATGCAAGTATCGAACTCATGCCCATGAAGGAGGGTGTGGTTCCATGTTATTTGAATACAATTCTGGAAAATTGATCAGCGGAGGACAAGACCGTTCAATTAAAGTCTGGGACACAAACACTGGATCTTTGAGTAGTACCCTTTATGGTTGCCTTGGTTCTGTACTTGATCTTGCCATTACCCATGACAATAAATCTCTAATTGCAGCTAGCAGCTCAAACAACCTGTTCGCATGGGATATCACCTCTGGACGGGTTCGTCATACTCTAACTGGCCACACTGATAAAGTCTGTACTGTTGACGTAAGCAAATTCTCCAATCGGCATGTGGTTAGCGCTGCTTATGATCGAACCATTAAAGTTTGGGATTTACAGAAAGGTTACTGCACCAACACAATCATTTTCCACAGCAACTGCAATGCAATATGCTTCAGTATGGATGGGTTGAGTATCTTCTCTGGCCACGTCGACGGAAACCTCCGGTTATGGGATATCCAGACGGGAAAAATGCTCGGAGAAGTTGCAGCTCATTCACTAGCTGTCACTTCTATTTCTCTGTCTAGAAACGGCAATGTAATATTGACAAGCGGGAGAGATAACTTGCACAATTTATTCGATATACGATCGCTTGAAGTTTGCAGCACTTTAAGGGCGAGTGGAAACAGAGTTGCCTCTAATTGGAGTAGATCGTGTATGAGTCCAGATGACAACTATGTGGCCGCTGGGTCAACTGACGGGTCTGTTCATATTTGGTCGATATCAAAAGCCGACATAGTGAGTACACTGAAAGAACACACCTCATCGGTTTTGTGTTGTTCATGGAGTGGTCTCGGAAAACCTCTTGCCTCGTCCGACAAAAATGGAGTAATATGCACTTGGACTTGA 1533 44.49 MPLSQEEIGEAAIKHALKALRKRHLLEEGAHGPAFLALSRPIALLGLEWKEKVENLEMELQQCNKAQSRLSEQLVVEVAENRASRALITEKDVMIDKMQKELTFTREECSELKTDLEEKFKALELILVENKEIKAELEAMIVKARNAEAENRMLVDRWMLQKMQDAERLNEANALYEDMIERLKASGLEKLARQQVDGVVRQSEEGAEYFDSVIPSTCKYRTHAHEGGCGSMLFEYNSGKLISGGQDRSIKVWDTNTGSLSSTLYGCLGSVLDLAITHDNKSLIAASSSNNLFAWDITSGRVRHTLTGHTDKVCTVDVSKFSNRHVVSAAYDRTIKVWDLQKGYCTNTIIFHSNCNAICFSMDGLSIFSGHVDGNLRLWDIQTGKMLGEVAAHSLAVTSISLSRNGNVILTSGRDNLHNLFDIRSLEVCSTLRASGNRVASNWSRSCMSPDDNYVAAGSTDGSVHIWSISKADIVSTLKEHTSSVLCCSWSGLGKPLASSDKNGVICTWT 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2527415 2529606 - BLOR06635 Blo15g00241 70641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00241 510 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Blo15g00241 510 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 5 510 - -
Blo15g00241 510 ProSitePatterns Trp-Asp (WD) repeats signature. 241 255 IPR019775 -
Blo15g00241 510 Coils Coil 130 150 - -
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 477 IPR001680 GO:0005515
Blo15g00241 510 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Blo15g00241 510 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Blo15g00241 510 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Blo15g00241 510 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Blo15g00241 510 SUPERFAMILY WD40 repeat-like 213 509 IPR036322 GO:0005515
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 259 - -
Blo15g00241 510 Gene3D - 50 353 IPR015943 GO:0005515
Blo15g00241 510 CDD WD40 225 509 - -
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 348 IPR001680 GO:0005515
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 343 - -
Blo15g00241 510 Gene3D - 354 510 IPR015943 GO:0005515
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 478 510 - -
Blo15g00241 510 Pfam Autophagy protein 16 (ATG16) 50 170 IPR013923 -
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515
Blo15g00241 510 Coils Coil 166 186 - -
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 389 IPR001680 GO:0005515
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 431 IPR001680 GO:0005515
Blo15g00241 510 Pfam WD domain, G-beta repeat 447 468 IPR001680 GO:0005515
Blo15g00241 510 Pfam WD domain, G-beta repeat 302 339 IPR001680 GO:0005515
Blo15g00241 510 Pfam WD domain, G-beta repeat 345 380 IPR001680 GO:0005515
Blo15g00241 510 Pfam WD domain, G-beta repeat 224 254 IPR001680 GO:0005515
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 510 IPR001680 GO:0005515
Blo15g00241 510 Coils Coil 95 115 - -
Blo15g00241 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 342 380 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 215 254 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 425 468 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 299 339 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 471 510 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 383 422 IPR001680 GO:0005515
Blo15g00241 510 SMART WD40_4 257 296 IPR001680 GO:0005515
Blo15g00241 510 Coils Coil 46 73 - -
Blo15g00241 510 PANTHER AUTOPHAGY PROTEIN 16-LIKE 5 510 IPR045160 GO:0000045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00241 K17890 ATG16L1; autophagy-related protein 16-1 - tcc:18605006 842.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00241 Blo-Chr15:2527415 Blo06g00440 Blo-Chr6:25140231 5.22E-19 dispersed
Blo15g00241 Blo-Chr15:2527415 Blo05g00724 Blo-Chr5:25414576 1.78E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00241 Blo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0