Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00243 ATGAATAATTGGCCATGGTTCGAGTTTGATGCAGATGGAAGGCAAGGGTGGCCTGAGTTGGCACCCTATGACGCCATTCATGTAGGGGCAGCTGCCCCAGAAATTCCACAAGCTCTTGTTGATCAGTTGAAGCCCGGAGGCAGAATGGTGATTCCTGTGGGTAATATTGTTCAGGATTTGAAGGTGGTGGACAAGAACTCGGACGGCTCTATCAGCGTCCACAGCAAGACTTCTGTCCGTTATGTGCCTCTCACAAGCCGGGACGCCCAGTTACGAGGTTAA 282 51.42 MNNWPWFEFDADGRQGWPELAPYDAIHVGAAAPEIPQALVDQLKPGGRMVIPVGNIVQDLKVVDKNSDGSISVHSKTSVRYVPLTSRDAQLRG 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2543254 2543535 + BLOR06637 Blo15g00243 70643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00243 93 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 11 88 - -
Blo15g00243 93 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 11 93 IPR000682 GO:0004719|GO:0036211
Blo15g00243 93 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 11 93 - -
Blo15g00243 93 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 11 65 IPR029063 -
Blo15g00243 93 Gene3D Vaccinia Virus protein VP39 7 90 IPR029063 -
Blo15g00243 93 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 11 26 IPR000682 GO:0004719|GO:0036211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00243 K00573 E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] - rcu:8278251 156.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00156 Blo15g00243 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00243 Blo-Chr15:2543254 Blo13g00156 Blo-Chr13:5238320 2.27E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g867 . . Bda06g00625 Bda15g00531 Bpe12g00677 . . . . . Cma10g00082 Cma11g00061 Car10g00074 Car11g00055 Sed08g0070 . Cpe04g01591 Bhi02g00585 Tan09g2322 Cmetu02g0735 . . . . Cla06g01710 Cam06g1899 Cec06g1948 Cco06g1952 Clacu06g1855 Cmu06g1796 Cre06g2611 Cone2ag0941 Cone16ag0061 . . . . . . Blo13g00156 Blo15g00243 . . . . . Bma08g00074 . Cmo10g00084 Cmo11g00063 . . . . . . . . . . . . . . . . . . . . Lsi06g01604 Csa01g00093 Chy02g02628 Cme02g02027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003446 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00243 Blo_Chr15 FPKM 58.78022 65.827805 45.062977 47.68388 70.053444 70.640221 74.695099 42.91909 41.533283 45.54285