Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00251 ATGGATCCGAATCCGAAAAGCTTCCCAATTCTCTCCTACGTTATGGCTCGAATCCCTACCATTGGACCTCGGACGTCACCCGCCACTTCCGATTTCAGCTCCGTTCAATTCGACGTCGAACAGCCGGCCACGACGTTGCCTCGTCCGGTTGATCCTTCAGCCTCGTCTTTCGGCCAAATCGTCGACCATATGCCTCATCTATCGGACCCGAACCTCCTGGCTTCTATGACTCGCGCCGTGTCGGACGTGTCTCAGACCCGATCTGTGCTCAAAACTCTCGGTGACAGACCGGACCACGAGAGCGTCGACACCGCCAAGGCTAAGCTCGCTGAGATCGAGGCTAATTTGTCTAAACAGCTAGAGGAGATCGTTCTTTCGCCGCGGCCGGTCGAACTGGATCGCCCCCAATGGCGAGCGCACCAAGCGGAGAAGGAAATACTGTGCCGGCAGTCATCGGATAAGGAGAAGCAGATTTATAAAGCGCTTATTCAGTTGGATGAGATGCACGAGGCCTATGAGAAGTTGTTGAAGGAAGCGGAAGAACGGTTGGTAAAGATTTACCGGTCGGCGGAGCGTGGAGTAGAAGAGGAGGACGTGGCTCCCGCAACTGATGAGATTAATGAGGAGGTGGTTGGGATTCTTCACGATGCGAGTGGGAATCAATTGGAGCGCATTGATATTTCCGGCCGCAGGTTGCGCATTTTGCCTGAAGCATTCGGGCATATTCGTGGTCTGACCGTGCTCAACGTTTCCAGTAATCAACTTGAGGTTCTTCCTGATGCCATAGCTGGTTTGGAGAACCTTGAGGAGCTAAATGCCTCGTCGAATCTTTTGGGGTCTCTTCCAGATTCAATTGGATTGTTGCAAAAGCTGAAATTCTTAAATGTTTCCGGGAACAAGTTTACTTACCTTCCTGATTCTATATGCTACTGCAGGTCACTGGTGGAGTTGGATGTAAGCTTTAATGGCATAACGTACTTGCCAACAAACATTGGTTATGAATTGGGAAAACTGCGGAAGCTTTTTATCCAATTGAACAAGTTGCGTACTCTTCCTACCTCTGTTTGTGAGATGAGATCTCTGTGCCATCTAGATGCCCATTTCAATGAGCTTCGTGGCCTTCCAATTTCGATTGGGAGATTGGTTAATCTGGAGGTTCTCAACTTGAGCAGTAACTTCAGTGATCTGAAAGAACTTCCCGAGACTTTTGGTGATTTAATCAACCTCAAGGAACTTGACCTCGGCAACAATCAGATTCATGCTCTTCCTGATACATTTGGTCGCCTTGACAACTTGACCAAACTTAACTTGGACCAAAATCCTATTGTAATTCCACCCTTGGAAGTTGTGAAAGAAGGGGTTGAAGCAGTTAAACTGTATATGGCTAAGAGATGGCTTGAAATTCTGGTGGATGAAGAGAAAAAGAGCATGCTTGAAGTGCAAGAAGTGGGACAGACTGGATGGCTGACGCGTAGCTCTTCCTGGCTGAAGAGTTATGCTTCTGGTGTGACGGAATATTTGACATCCCCCAGAGCACCCAGGGACCCTTATCTCGACCAACAACTATAA 1569 48.5 MDPNPKSFPILSYVMARIPTIGPRTSPATSDFSSVQFDVEQPATTLPRPVDPSASSFGQIVDHMPHLSDPNLLASMTRAVSDVSQTRSVLKTLGDRPDHESVDTAKAKLAEIEANLSKQLEEIVLSPRPVELDRPQWRAHQAEKEILCRQSSDKEKQIYKALIQLDEMHEAYEKLLKEAEERLVKIYRSAERGVEEEDVAPATDEINEEVVGILHDASGNQLERIDISGRRLRILPEAFGHIRGLTVLNVSSNQLEVLPDAIAGLENLEELNASSNLLGSLPDSIGLLQKLKFLNVSGNKFTYLPDSICYCRSLVELDVSFNGITYLPTNIGYELGKLRKLFIQLNKLRTLPTSVCEMRSLCHLDAHFNELRGLPISIGRLVNLEVLNLSSNFSDLKELPETFGDLINLKELDLGNNQIHALPDTFGRLDNLTKLNLDQNPIVIPPLEVVKEGVEAVKLYMAKRWLEILVDEEKKSMLEVQEVGQTGWLTRSSSWLKSYASGVTEYLTSPRAPRDPYLDQQL 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2597508 2600080 - BLOR06645 Blo15g00251 70651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00251 522 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Blo15g00251 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 512 - -
Blo15g00251 522 Pfam Leucine Rich repeat 310 325 IPR001611 GO:0005515
Blo15g00251 522 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
Blo15g00251 522 Coils Coil 102 122 - -
Blo15g00251 522 SMART LRR_typ_2 312 334 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 265 287 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 381 405 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 406 429 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 242 264 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 335 358 IPR003591 -
Blo15g00251 522 SMART LRR_typ_2 288 311 IPR003591 -
Blo15g00251 522 Coils Coil 162 189 - -
Blo15g00251 522 Gene3D Ribonuclease Inhibitor 338 453 IPR032675 -
Blo15g00251 522 Pfam Leucine rich repeat 383 442 IPR001611 GO:0005515
Blo15g00251 522 Pfam Leucine rich repeat 222 278 IPR001611 GO:0005515
Blo15g00251 522 SMART LRR_bac_2 265 284 - -
Blo15g00251 522 SMART LRR_bac_2 381 402 - -
Blo15g00251 522 SMART LRR_bac_2 311 330 - -
Blo15g00251 522 SMART LRR_bac_2 335 354 - -
Blo15g00251 522 SMART LRR_bac_2 219 238 - -
Blo15g00251 522 SMART LRR_bac_2 244 261 - -
Blo15g00251 522 SMART LRR_bac_2 406 425 - -
Blo15g00251 522 SMART LRR_bac_2 288 307 - -
Blo15g00251 522 Gene3D Ribonuclease Inhibitor 157 337 IPR032675 -
Blo15g00251 522 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 512 - -
Blo15g00251 522 SUPERFAMILY L domain-like 216 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00251 - - - mnt:21385646 716.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00144 Blo15g00251 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01044 Blo-Chr11:28342809 Blo15g00251 Blo-Chr15:2597508 5.03E-139 dispersed
Blo14g00673 Blo-Chr14:14960796 Blo15g00251 Blo-Chr15:2597508 4.58E-06 dispersed
Blo15g00251 Blo-Chr15:2597508 Blo16g00828 Blo-Chr16:34661182 3.29E-12 dispersed
Blo13g00144 Blo-Chr13:4553508 Blo15g00251 Blo-Chr15:2597508 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00251 Blo_Chr15 FPKM 27.731724 28.699753 47.317005 48.195221 28.137613 27.875441 27.296219 42.566151 38.316338 39.947182