Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00263 ATGGCTTTAAGCCCCGACTCTTCTCTCTCTCCTCTGAAATGGAAGTTTTCTCAAGTGTTCGGCGAACGAGCTTCATCAGAAGAAGTTCAAGATGTTGATATCATTTCCGCTATTGGATTCGATAAGACTGGCGATTACCTAGCTGTTGGAGATCGGGGTGGTCGTGTTGTAATATTTGAAAGGAAGGTTGGGAAAGATACTTCAAATCAGTATCATATTCAGAATAAGTTGGATCGGTTGAATCATACCTCCAAGTTTCATCCCGAATATCAGTACAAGACTGAATTTCAAAGTCACGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAAATTAATAAAGTAAGATGGTGTGCGACACCCAATGGAGCTCTTTTTATCCTCTCGACAAATGATAAGACAATTAAGCTGTGGAAGATTAAAGAACAAAAGGTGAGAAAAGTAGAGGAGGTGAACCCAATCCCTCTTGTGCATTCAGAGAATACACTTTTGGCTGAAAGGAGTTTCATAAGCAGAGAAGGAAAGCCTTCTCTTTCTAATGGCTATTATCTGGAACAAGCTGAGAAAGATGTGATCACTAAGCCGCCGTCACAAGATCTGCAGGCTATTGTTGATGGCTTTGAGAATGCATCTTGTGCAAGATGTCGAAAGGTGTATGCTCATGCTCATGAGTTTAATATTAACTCCATTTCAAATAATAGTGATGGGGAGACATTTATTTCTGCAGACGACTTGAGAATAAACTTGTGGAATTTGGAGATTAGCCAACAGTGTTTCAATATCATAGATATGAAGCCACAGAGCATGGAGGATCTCACTGAGGTCATAACATCAGCTGAATTTCATCCAATGCAATGTAATCTGCTTGCATACAGTAGCTCAAGAGGTTTCATTCGTCTGGTAGACATGCGGCAGTCAGCGTTATGTGATCACAGTGCAGTTCTATTTCAAGACAGAGAATCTGCCAGAGTCACATCATTTTTCACAGAGATTATAGCATCCATATCTGATATAAAGTTTACAAATGATGGCCGGTACATCCTAAGTCGGGATTACATGAACCTAAAGCTATGGGATATGCGAATGGATTCTTCACCAGTTACCATATTCAAAGTTCACGAGCACTTGCTCCCTAGGTTATGCGAGCTGTATGACAATGACTCAATATTTGACAAATTTGAGTGCTGTGTCAGCGCAAATGAGTATCATTTTGCTACTGGAACTTACAGTAATCTTTTGCGTACTTACTCCTATGGCTTCGGAAACGAGGACGGAATCACTATTGAAGCTACCAAACACCCAAATAGGAAGCCACTTCTCCATTCCCCCCCAAGAACTAGGAGATCTTCCTTAAGCAACCTGACGCGTGGATTTTTCCGGCTAAATCAAAGGCTACGTGCTCGTACAAGAGTTTCCATAGCTTTAAGCCGTCAGAATCTAAATCAGATTAGCCCTCTTCAACAACCTGATTGTTCTACAATAAAATGGCCAGATAGATTCAACATAATCCAGTTGCCAGAATCGAGCACGTTCCTCTTCTTTCAGTTTGCCATTTACGCTATAGCTGTGAACTACCAGGCAGTAAGTGTGCAGATTCTTAATTACGTTTGA 1620 40.8 MALSPDSSLSPLKWKFSQVFGERASSEEVQDVDIISAIGFDKTGDYLAVGDRGGRVVIFERKVGKDTSNQYHIQNKLDRLNHTSKFHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVRWCATPNGALFILSTNDKTIKLWKIKEQKVRKVEEVNPIPLVHSENTLLAERSFISREGKPSLSNGYYLEQAEKDVITKPPSQDLQAIVDGFENASCARCRKVYAHAHEFNINSISNNSDGETFISADDLRINLWNLEISQQCFNIIDMKPQSMEDLTEVITSAEFHPMQCNLLAYSSSRGFIRLVDMRQSALCDHSAVLFQDRESARVTSFFTEIIASISDIKFTNDGRYILSRDYMNLKLWDMRMDSSPVTIFKVHEHLLPRLCELYDNDSIFDKFECCVSANEYHFATGTYSNLLRTYSYGFGNEDGITIEATKHPNRKPLLHSPPRTRRSSLSNLTRGFFRLNQRLRARTRVSIALSRQNLNQISPLQQPDCSTIKWPDRFNIIQLPESSTFLFFQFAIYAIAVNYQAVSVQILNYV 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2813309 2822589 - BLOR06657 Blo15g00263 70663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00263 539 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 102 116 IPR018067 -
Blo15g00263 539 PANTHER OS02G0617600 PROTEIN 8 470 - -
Blo15g00263 539 Gene3D - 67 452 IPR015943 GO:0005515
Blo15g00263 539 SUPERFAMILY WD40 repeat-like 33 421 IPR036322 GO:0005515
Blo15g00263 539 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 151 IPR001680 GO:0005515
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 226 253 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 393 419 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 367 392 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 254 281 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 311 338 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 282 310 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 339 366 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PIRSF PPA2_B55 5 482 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 8 470 IPR000009 GO:0000159|GO:0019888
Blo15g00263 539 Pfam WD domain, G-beta repeat 218 254 IPR001680 GO:0005515
Blo15g00263 539 SMART WD40_4 265 305 IPR001680 GO:0005515
Blo15g00263 539 SMART WD40_4 215 254 IPR001680 GO:0005515
Blo15g00263 539 SMART WD40_4 102 142 IPR001680 GO:0005515
Blo15g00263 539 SMART WD40_4 324 362 IPR001680 GO:0005515
Blo15g00263 539 SMART WD40_4 25 60 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00263 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - jre:109003870 670.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00065 Blo-Chr5:620901 Blo15g00263 Blo-Chr15:2813309 0 dispersed
Blo06g00729 Blo-Chr6:30481295 Blo15g00263 Blo-Chr15:2813309 0 dispersed
Blo10g00989 Blo-Chr10:29110098 Blo15g00263 Blo-Chr15:2813309 0 dispersed
Blo15g00263 Blo-Chr15:2813309 Blo07g00768 Blo-Chr7:24805562 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00263 Blo_Chr15 FPKM 22.020056 27.12001 27.405003 30.707426 30.198874 28.016096 30.788967 34.465 33.255707 32.883606