Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00267 ATGAAGGTAGTTGCTTTTACCAGATGCCGTCATGCCCATTCGATCATCCCTCGATTAGCTTCTATATTGCAAATCCGGTACTTCCAGCCTGATTTTACTCCTAGAGATTCAAACGCCAAGCCAAAAAGGTATAAATATCCGCCATCTTATGACCCATATGGCCCTAGACCACCACCTTCTGACAAAATCATTCAGCTCGCAGAGCGAATTGCAACTCTACTTCCGGAAGAGCGGCGCCAAATTGGTCCTGCTTTGAGGGAGAGGCTCAGCCTTCCCAAATTGCGGGCAATTTCGACAGAGGGAATGGACGTGGGTTCCCAAGGGAGGGCAGCTTCTGGTGCTTCCCCGCTTGAGGAGAAGAAGGAGAAAACAGCATTTGATGTTAAATTGGAGAAATTTGACGCTGCTGCAAAAATTAAGGTGATCAAAGAGGTGAGAGCATTTACCAATCTCGGGTTGAAAGAGGCTAAAGATTTGGTCGAGAAGTCTCCTGCTTTGCTTAAACAGGGGGTCACCAGAGAGGAAGCAAATGATATAATAGAGAAGATAAAGGCCGCAGGGGGAGTTGCTGTTATGGAGTGA 582 47.08 MKVVAFTRCRHAHSIIPRLASILQIRYFQPDFTPRDSNAKPKRYKYPPSYDPYGPRPPPSDKIIQLAERIATLLPEERRQIGPALRERLSLPKLRAISTEGMDVGSQGRAASGASPLEEKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKSPALLKQGVTREEANDIIEKIKAAGGVAVME 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2882185 2882766 - BLOR06661 Blo15g00267 70667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00267 193 Pfam Ribosomal protein L7/L12 C-terminal domain 126 189 IPR013823 GO:0003735|GO:0006412
Blo15g00267 193 PANTHER 39S RIBOSOMAL PROTEIN L12 1 193 IPR000206 GO:0003735|GO:0005840|GO:0006412
Blo15g00267 193 CDD Ribosomal_L7_L12 62 192 IPR000206 GO:0003735|GO:0005840|GO:0006412
Blo15g00267 193 Gene3D - 120 192 IPR014719 -
Blo15g00267 193 PANTHER RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEIN 1 193 - -
Blo15g00267 193 SUPERFAMILY ClpS-like 122 192 IPR014719 -
Blo15g00267 193 MobiDBLite consensus disorder prediction 34 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00267 K02935 RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 - pvy:116135565 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00267 Blo-Chr15:2882185 Blo16g00010 Blo-Chr16:594619 2.23E-33 dispersed
Blo15g00267 Blo-Chr15:2882185 Blo11g00661 Blo-Chr11:7142039 7.95E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g755 . . Bda06g00597 . . . . Bma12g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0140 . . . . . Blo15g00267 . . Bpe07g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004380 1 2 1 1 1 2 1 2 1 1 2 1 1 3 2 1 2 3 1 2 1 1 2 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00267 Blo_Chr15 FPKM 6.324484 5.106366 8.938585 9.075929 4.092821 3.864799 3.837021 15.356173 16.907 21.644455