Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00268 ATGAATGAGGATCGGGTGGAAGAGAGAGAGGCTAACAAACAGACGACTACGGGATCTGTGTTTGTGAACTCAGAACCAATGCGAGAGGAGCAAGTTCAAAATGCTGTAAAGTTCCTTTCACACCCCAAAGTCCGTGGCTCTCCAGTCATGTATAGAAGGTCATTTCTTGAGAAGAAGGGTCTCACAAAGGAAGAGATTGATGAAGCATTTAGACGTGTGCCTGATCCATCTCCAACAGCACAGACATCCAACATAAATAATGCAGATGGGCAGGGGAAGTTGGCCCCAACGCAAACTTTGGAGTCTGCAACTCCTGGTCCTTCTGGTGTTGTTTCCTCAGTGGGTAGCACAAGACAGTCTAGATTTCAGTGGACTCATGCTGTTTATGCTGTAGGAATATTGGCCATTTCAGGTGCTGGATCAGTTTTGATAATTAAGTTTCTTGAGTTTCGTTTGGAACTGTACCCAACTTGTGGGCAAGATGGAGTTGTTGATATCATTAAATCGTCTAAAGCAATAGTTCCGAGGTTGAAATCTTGGATACGAAAGATTGTATTGGAAGAAGATGATGACATTGTCAAGAAAATTGATGCAAAACCTAATTTGGCCGAAGAAGTAGCAGCTGCTGCAAAAGCAGCTGCAGCTGCAGCAACAGACGTGGCCAAAGCTACCCAGGAAATGTTTGATTCAAAAAGTGAAGAGAAAAGAAAATTTGAGGAACTTGTCAACTTGTTAGATGCACAGGTACGAGAAATGAAGGTTATGACTAGTACACTGCAAAGATTGGAAGGTATTAGATCGAAATTTTTTTTCTTGTTACTGAAATTTCTTAATTATCGACTCTTGCTTTTTTGGTCTCATTCTACAATTGTATTTGCAGTGAGATCATCCTCACCTCCCACGACTGTCGAACCCCAATCTGCACCACACGGTCCACACCCAAAGTCATATTCGGAGATTATGGCCATGGTCCAAAGAGGAGAAAAGCCTTTAAATAGCAGAGATATCAATGATCTACTCCCAAACCCAAATCAGCAACCATCAAATCCTCGCTTGCCTCCAAGAACTAAGCCTTGGGAAGTTGGCCCCACTCAACATAGCTCACATCCTTTCCTCCAGTCTCAAGTAAGTGGAGAAGGTTTGAATCCCTTGGTACTAGATAATTGGCAGCGTAAAAATGTCAGCATCTCAGAAGTTGAAAACGAAGACGAGCCAAAATCAGGATCCAATGGTGGCAATGCAATGCAACCATCAGCCCGTAGCATGTGGGTCCCACCCCTGGCACCCCCAGTGGTGATGGCGGAAGCAGCCGAAGCAATCCGACGGCCTAAAACCTCGGCTCAGAAAGAACAAACGAACGATGAGCGATTTCTAACGACTGACGAGTTGCAGAGGATCACAAAAGTATCCGAATTTGGTGGAGCTGATGATGATACTGGGAGCCGAAGCCTCGCAATGAGCTCAAACGAAATACAAGAAAACATTTTTGAAGGATAA 1497 44.15 MNEDRVEEREANKQTTTGSVFVNSEPMREEQVQNAVKFLSHPKVRGSPVMYRRSFLEKKGLTKEEIDEAFRRVPDPSPTAQTSNINNADGQGKLAPTQTLESATPGPSGVVSSVGSTRQSRFQWTHAVYAVGILAISGAGSVLIIKFLEFRLELYPTCGQDGVVDIIKSSKAIVPRLKSWIRKIVLEEDDDIVKKIDAKPNLAEEVAAAAKAAAAAATDVAKATQEMFDSKSEEKRKFEELVNLLDAQVREMKVMTSTLQRLEGIRSKFFFLLLKFLNYRLLLFWSHSTIVFAVRSSSPPTTVEPQSAPHGPHPKSYSEIMAMVQRGEKPLNSRDINDLLPNPNQQPSNPRLPPRTKPWEVGPTQHSSHPFLQSQVSGEGLNPLVLDNWQRKNVSISEVENEDEPKSGSNGGNAMQPSARSMWVPPLAPPVVMAEAAEAIRRPKTSAQKEQTNDERFLTTDELQRITKVSEFGGADDDTGSRSLAMSSNEIQENIFEG 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2897427 2901135 - BLOR06662 Blo15g00268 70668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00268 498 Gene3D - 20 86 IPR036388 -
Blo15g00268 498 MobiDBLite consensus disorder prediction 70 114 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 361 377 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 332 377 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 441 498 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 76 114 - -
Blo15g00268 498 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 8 147 IPR025655 GO:0005515|GO:0005778|GO:0016560
Blo15g00268 498 MobiDBLite consensus disorder prediction 13 28 - -
Blo15g00268 498 Pfam Family of unknown function (DUF5572) 312 361 - -
Blo15g00268 498 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 8 147 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 1 28 - -
Blo15g00268 498 Pfam Pex14 N-terminal domain 28 72 IPR006785 -
Blo15g00268 498 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 171 489 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 398 420 - -
Blo15g00268 498 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 171 489 IPR025655 GO:0005515|GO:0005778|GO:0016560
Blo15g00268 498 MobiDBLite consensus disorder prediction 297 316 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 481 498 - -
Blo15g00268 498 MobiDBLite consensus disorder prediction 442 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00268 K13343 PEX14; peroxin-14 - pvy:116135841 454.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00057 Blo15g00268 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo13g00057 Blo-Chr13:866282 Blo15g00268 Blo-Chr15:2897427 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g746 . . . . . . . Bma12g01035 . . . Cma11g00095 Car10g00115 Car11g00095 . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00057 Blo15g00268 . . . . . . . . Cmo11g00095 . . . . . . . . . . . . . . . . . . . . . . . Cme02g01981
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005495 1 2 2 2 1 0 2 0 1 1 1 0 1 1 1 1 0 3 1 0 1 2 1 2 2 0 2 5 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00268 Blo_Chr15 FPKM 28.583696 30.666088 18.051823 17.41054 12.378697 12.392218 9.808048 16.640404 21.672728 19.652592