Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00276 ATGCGTGGGAAGGGAGTTGAGGAGAGGAAACGGAATCGGCACATGTTGACAGTCTCTACGCATAGCACCACGATTGTTGCAGCCGATGATTTTTCTTCCTCCTCGTCGTCTTCACCTGATTCGTTTTGCAAGGATGGACGCAAGATTACTGTTGGCGAGTGTGCTCTTTTCAAACCACCCCATGACGCCCCTCCTTTCATTGGCATAATAAGGTGTTGTACTGTAGATAAAGAAAGTAAGTTGAAGTTAGGTGTGAATTGGCTCTATCGACCTTCTGAAGTCAAACTCGGCAAAGGCATCCTTTTGGAGGCTGCACCAAACGAAGTTTTCTATTCTTTTCACAGGGATGAAATTCCTTCTGCATCTTTACTTCATCCTTGTAAAGTTGCATTCCTTCCTAAAGACATTGAACTCCCATCAGGAATTTTATCGTTTGTCTGCCGGCGTGTCTATGACATAACGAACAAGTGCTTATGGTGGTTAACTGATAAGAATTATATTAATGAACTTCAGGAAGAAGTAGATCAGTTATTATTTAAGACGCGAATAGAGATGCATACAACAGTGCATCCTGGTGGCCGATCACCCAAGCCAACATTACAGCTAAAAGCTAGTTCTGATGGCGTACAAAATACTTTATCTAGTCAGATAAAAGGGAAGAAAAGGGAAAGGGGGGATCAGAGCTCTGAACCTATTAAACGAGAGCGTATTACGAAAATAGAAGGGGAACATGCTCACGGCAAATTGGAAAGTTTTCTTAAGTGTGAGATTGCCAAAATCACTGAAAAGGGAGGTCTTTTAGACTCTGAAGGGGTTGAGAAATTGATTCAGCTAATGCTTCCCGAAGGAAGTGATAAAAAAATAGATTTGGCTAGCAGATCAATGCTTGCTGGTGTGATAGCAGCCACAGACAATGTTGAATGCCTTAGTCAGTTTGTGCATTTGAAGGGTTTGCCTGTATTTGATGAATGGCTCCAGGAGTTTCACAAGGGAAAATTTGGTGATGGTAGTAGTCCCAAGGAATGCGATAAGTCAGTTGAAGAATTTCTCTTGATTTTACTTCGCGCACTTGATAAACTTCCGATCAATCTTCTTGCTTTACAAATGTGCAACATTGGGAAGTCTGTGAATTGTTTACGCACGCATAAGAACATAGAAATTCAGAAGAAAGCAAGAAGTTTAGTAGATACATGGAAGAAACGGGTTGAAGCAGAAATGAGTATAAATGATTCAAAGTCTGGATCCAACCAAAGTGTTCCTTGGACTACAAAGCCCCGTCTTTCCGAAGCATCTCATGGTGGAAGAAACCCAGGTATATCCTGTGAGGTTGCAATGAAGAGTACAGTTACACAACTTTCTACGTCCAAAGCTGCATCAGTTAAGGTTGTGCTTGATGAGGTAATTGTCAGATCTGCTTCTGCTTCCCCGGGTTCCATGAAATCAGTGCCATCACCAGCTTCAGTAAGTATTAATTCAAAAGATGGACTTCCCAGAACTCCTGCCTTTAGTAGCGCCAACGATGTTCCTCAAACAGTGGGAAGGGATGAGAAAAGCAGTAGCTCTAGTCAATCTTACAATAATAGTCAGTCTTGTTCAAGTGAACATGCTAAAACTGGGGGGATGGGAAAGGAAGATGCCAGAAGCTCTACTGCTGGTTCAGTTGCTATGAGTAACACCCCAGGTGGTTCTTCACGGCAGCGCAAGTCACTTAATGGTTTCCCTGGCTCAGCTGGTACTGGAGCCCAAAGAGAAACAATATCTGGAAGAAGTTCTTTGGTCCACAAAGGTACAACTTCAGAGAGAATTTCACAATGTGGAACTTCATCTGACAAGACACCTGATGTAAGTTTTGGAGAGGGACATGGCCATAAGTTTATCGTTAAGATCACAAATCGTGGTCGTAGCACAGGAATAAGTGCCAATGTAGGATCTGTTGAGGACCCTTCATTATTAAATAATAGGTCCTCTTCTCTGGGGCTTTCTGAAAAGCATGATCATTTTGGTTGCATCTCAAAGGAAAAAAACGACGCCCATCAAGCAACAATTAATTCAGGTGTGAATACAGAGTCTTGGCAAAGTAATGATATCAAGGATGTAGTGTCTAATGATGTTCAAGGGTCCCCTGCCGTTGGGGAAGAGGGCCGTATGACTATAGGGGATGTCAAAGCTTCAAAAATTTCTTCCCTGTCCCCAAGAAATGAAAATAAAATTGGAAATACGCCAGAGCCTTCTTTGAGCTCAATAAATGCTTTAATTGACAGTTGTGTAAAATACTCTGAAGCTGCAGATGATATGGGAATGAACATACTTGCTAATGTAGCTGCTGGAGTGATGTCCAAGTCTAGCTTTGAATCCCCTACTAATTCTCCGGAAAGAAATATTGCTCCAGTTGAGTGTTTATATTTAGAAAATGAATTGAAAGTTAAAGCATCTAATGATTGTGTTGATGAGAAAAAACAAAATGTTGATGCTAAGTTGGCTTCACAGGTTGAAGAGAAGCCTGCTGTGGAGCTCAATGGGCATTTAAATTCTTCTGTTTTGATCATTCAGGAAACCACAATGACATCCTCGGAGGTTAACAAAAAAAAGACTGAAAAATTTTCAGCTGCTTCCCCTATAATGTCATTGGAGAAAAGCAGAGATAGCGATGGAGCTAAACCACTAGCAGATAGAACGATTGCTGGTGGACTGAGTGGGGATACCAATTTAGAATCTAAAACACCTTCCAGTTGTTCTTTGACAGATGAAGTTAAGGTGAATAAGACTGTTTCAAATCTGGAAGTTGAGGGGGGTGTGGTTGAGGGATCATCTTTGTCACATCCATTGTCTGAGGCTGATGGCAAGGATGGTGGGGAACTGATTGAGAAAAAGGCTTCTGTGGGGAAGCATTCTGATTCTGGTGAAGGAATTAATGATGAAGTCCAGTGTACTTTTGGTTTGGCTGAAGCTGTAGTCATGGTAAGCTCTAGTGAAATGAAGACTCAGAAAAATGATGAAAATGTGGCAGCTTTTGATTTTAACCAGCCAGATAAACAACCCACAAACTGTGATGCTAATATTTCTTTTGAGACCCAAGACTTAGCACGGTGTCCAACTGCCACTAATCATGATGGGGATCACATGAATGAGAACGTGAAACCTAAATATGGTGAACAAAATGTCGGGCAATTTGATCTCAAGGTGTCACTTGTATTTCCCATGCAAGATGATGAAGGCCTGATATCTAGGGAATCCAAGTTAAGTGGACTTGAAGCGGAGGAATCTACATCTACCATTGCTGATGCTTCTTCTATATCAGCTGCTGGGGTCGCTGATAATGATGCAAAGGTTGGATTTGATTTGAATGAAGGCTTTGATGTGGAGGATGGGAAATGTGGGGAGCCTTCTATCTCTACTGGACCAGACTGTTCTGCCGCTGTTCGGTTAATTAGCCCTATACCTTTTCCTATATCAACTGTATCAAGCCCCATCCCATCTTTAATTACTGTGGCTTCTGCAGCGAAAGGGCCTTTTGTGCCTCCGGAAGACCTATTGAGGTGTAAAGGAGAACTTGGTTGGAAGGGATCAGCAGCCACAAGTGCATTTCGACCAGCTGAACCAAGAAAACTTCCAGAGATGCCATTTGGCTCAACCAATTCTCCTGTTTCCGAGGCCTCTCCAACTGGAAAAAATAATCGTCCTCTCTTGGATTTTGACTTGAATGTACCTGATGAGAGAATTCTAGAAGATATGAATCCTCGAAATTCTGCTGTGGTGTCTGGCTCTAATAACAGAGAGAAAAGTAATTTGGGACATGATGTGGAGTCCAAATCATTACGGAGCTCTGGACGGCATGATCTTGATTTGAACCAAGTCAATGAATTCCCTGAGGCGAGCAATTACTCAACAAACAATGATAGAAGAACTGATGTTGTATTTTCCATCAACTCACCTGCCAACCCTCTCCGCAGTCCTCTTGTTGCCGAGGGGGGTGTTCGTAGAGACTTTGATTTGAATGGACCGTTTCTGGATGAAGCGGGTGCTGAACTATCACCTTTTAGTCAGCATGCCAAGAGCAGTGTGCCATCTCATGCTCCTGTTTCTGGTCTATGGATGAATAACGCAGAAATGGGAAGCTTATCGACCTGGTTTCCACCAGGAAACACCTATCCTACTTTTGCAGTACCATCAATCATGACTGAAAGGGAAGATCATCCATTCCCTGTTGCCACTGGTGGATCTCAAAGGATGTTGGGTCCCACTAGTGGTGGCAATGCATTTAGCCCTGATGCATATCGGGGACCGGTATTGTCTTCGTCGCCTGCAGTTCCTTTCCCTTCTGCACCTTTCCAATATTCTGTATTGTCTTTTGGAAACAACTTTCCTTTACCATCTGCCACTTATGCAACTGGTTCAACAGCATACCTGGATTCACCAGGTGGCAGGTTTTGCTTCCCTGCAGTTCATTCGCAATTATTAGCGCCCACTGGTCCAGTCTCAACCCATTACCCCAGGCCTTATGTTGTTAGCCTTTCAGACGGTAGCAATAGCAGTAGTCCTGAAGTTGNNNNCAATGAGTGGACTGATGACTTATTATGGAGCGGAGAGCGAGGACGAGATACTGACAGGAAATCTGAGAAATCGAGCCTCGTATTTGCAACGCGACAACCGAAGGTATGGGGATACGAGGGATCGGATTTTAGTGTCGTTGAAGAGTTTGCAGAGGGAAGCAAGAGGGTGGTTCGAGAGTTGTTGCTCAGAGGAGGAACGCCGGGCGATGGCATCTGCGTGGTACCACGTGACTTATCACCCGTCTTTTTGCGGGGAAGAAGAGACTAA 4818 43.3 MRGKGVEERKRNRHMLTVSTHSTTIVAADDFSSSSSSSPDSFCKDGRKITVGECALFKPPHDAPPFIGIIRCCTVDKESKLKLGVNWLYRPSEVKLGKGILLEAAPNEVFYSFHRDEIPSASLLHPCKVAFLPKDIELPSGILSFVCRRVYDITNKCLWWLTDKNYINELQEEVDQLLFKTRIEMHTTVHPGGRSPKPTLQLKASSDGVQNTLSSQIKGKKRERGDQSSEPIKRERITKIEGEHAHGKLESFLKCEIAKITEKGGLLDSEGVEKLIQLMLPEGSDKKIDLASRSMLAGVIAATDNVECLSQFVHLKGLPVFDEWLQEFHKGKFGDGSSPKECDKSVEEFLLILLRALDKLPINLLALQMCNIGKSVNCLRTHKNIEIQKKARSLVDTWKKRVEAEMSINDSKSGSNQSVPWTTKPRLSEASHGGRNPGISCEVAMKSTVTQLSTSKAASVKVVLDEVIVRSASASPGSMKSVPSPASVSINSKDGLPRTPAFSSANDVPQTVGRDEKSSSSSQSYNNSQSCSSEHAKTGGMGKEDARSSTAGSVAMSNTPGGSSRQRKSLNGFPGSAGTGAQRETISGRSSLVHKGTTSERISQCGTSSDKTPDVSFGEGHGHKFIVKITNRGRSTGISANVGSVEDPSLLNNRSSSLGLSEKHDHFGCISKEKNDAHQATINSGVNTESWQSNDIKDVVSNDVQGSPAVGEEGRMTIGDVKASKISSLSPRNENKIGNTPEPSLSSINALIDSCVKYSEAADDMGMNILANVAAGVMSKSSFESPTNSPERNIAPVECLYLENELKVKASNDCVDEKKQNVDAKLASQVEEKPAVELNGHLNSSVLIIQETTMTSSEVNKKKTEKFSAASPIMSLEKSRDSDGAKPLADRTIAGGLSGDTNLESKTPSSCSLTDEVKVNKTVSNLEVEGGVVEGSSLSHPLSEADGKDGGELIEKKASVGKHSDSGEGINDEVQCTFGLAEAVVMVSSSEMKTQKNDENVAAFDFNQPDKQPTNCDANISFETQDLARCPTATNHDGDHMNENVKPKYGEQNVGQFDLKVSLVFPMQDDEGLISRESKLSGLEAEESTSTIADASSISAAGVADNDAKVGFDLNEGFDVEDGKCGEPSISTGPDCSAAVRLISPIPFPISTVSSPIPSLITVASAAKGPFVPPEDLLRCKGELGWKGSAATSAFRPAEPRKLPEMPFGSTNSPVSEASPTGKNNRPLLDFDLNVPDERILEDMNPRNSAVVSGSNNREKSNLGHDVESKSLRSSGRHDLDLNQVNEFPEASNYSTNNDRRTDVVFSINSPANPLRSPLVAEGGVRRDFDLNGPFLDEAGAELSPFSQHAKSSVPSHAPVSGLWMNNAEMGSLSTWFPPGNTYPTFAVPSIMTEREDHPFPVATGGSQRMLGPTSGGNAFSPDAYRGPVLSSSPAVPFPSAPFQYSVLSFGNNFPLPSATYATGSTAYLDSPGGRFCFPAVHSQLLAPTGPVSTHYPRPYVVSLSDGSNSSSPEVXXNEWTDDLLWSGERGRDTDRKSEKSSLVFATRQPKVWGYEGSDFSVVEEFAEGSKRVVRELLLRGGTPGDGICVVPRDLSPVFLRGRRD 1605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2985776 2991398 - BLOR06670 Blo15g00276 70676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00276 1605 MobiDBLite consensus disorder prediction 475 617 - -
Blo15g00276 1605 SMART BAH_4 47 162 IPR001025 GO:0003682
Blo15g00276 1605 Pfam TFIIS helical bundle-like domain 353 402 IPR017923 -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 213 234 - -
Blo15g00276 1605 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 307 416 IPR035441 -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 475 536 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 408 425 - -
Blo15g00276 1605 Gene3D - 33 257 IPR043151 -
Blo15g00276 1605 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1551 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 1200 1230 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 550 614 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 1261 1277 - -
Blo15g00276 1605 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1551 - -
Blo15g00276 1605 SMART TFS2_5 325 404 IPR003617 GO:0005634
Blo15g00276 1605 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
Blo15g00276 1605 CDD TFIIS_I 329 403 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 1209 1223 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 878 909 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 217 234 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 1397 1418 - -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 1243 1281 - -
Blo15g00276 1605 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 275 406 IPR035441 -
Blo15g00276 1605 ProSiteProfiles TFIIS N-terminal domain profile. 319 405 IPR017923 -
Blo15g00276 1605 MobiDBLite consensus disorder prediction 407 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00276 - - - bhj:120071278 1566.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00047 Blo15g00276 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00276 Blo-Chr15:2985776 Blo17g00339 Blo-Chr17:3557476 8.89E-180 dispersed
Blo12g00881 Blo-Chr12:27015006 Blo15g00276 Blo-Chr15:2985776 1.22E-09 transposed
Blo13g00047 Blo-Chr13:695779 Blo15g00276 Blo-Chr15:2985776 0 wgd
Blo15g00276 Blo-Chr15:2985776 Blo18g00354 Blo-Chr18:3709939 5.90E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13315 PF08711 Med26 2.30E-11 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00276 Blo_Chr15 FPKM 12.445614 13.335611 13.144972 12.38306 27.368746 24.029417 27.908613 13.861818 14.112362 13.721574