Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00288 ATGGATCCTCCGCTAGTTAATGAGACTTCATTCTCGACCGTCAACCCATCCGTATACAGCTTGGCTGAGATTTGGCCGTTCGGGGAAGAAGCAGAAGGTGGTGTGTTGGGGCTCCGAATCGGTAGTTTGTGTCGAAATCTTGGTGGGTTTGCTGAGGGATCCGGAAATCGGGATGGGTCGGCGGAGGAATCGACGGTGACTGAGCAAAGCGGCAGCGGAGGGAGGAGGAAGAGGAAGGATGTGAGCTCAGAGGACGAATCTTCGAAAATGGTTCCCAAAAGTGGTGCTACTTACTTGAATGATTTCAATGGTAAACTGATGAAATTGGGAGAATCCAGAGATGAAAATTGTCGCCCAAAAGCTGAAGTAGAAGTTGAAACAAACTCGGGCGATGGGACCAAGCCCGACGAACCAAGTGCCAAGCCGTCCGTGCCACCTAAAGATTATATTCATGTGAGAGCAAGAAGAGGCCAAGCAACCGATAGCCACAGTCTAGCAGAAAGAGCGAGGAGAGAGAAAATCAGCGAGAGAATGAAAATTCTCCAAGAGTTGGTGCCGGGATGTAACAAGGTAACTATCACCGCCCGGCTCGTCAAATTATTTGAGCATCACAAACTTACTCTTTGGCTGCAGGTCATAGGGAAGGCATTCGTCCTCGACGAGATTATCAACTACATTCAATCTCTGCAGCATCAAGTTGAGTTCCTGTCCATGAAGCTCGAAGCGGTTAATTCGAGAATGAACGTGATTCCAGGCATAGAAGGCCATACTACCAAGGATAATGGACTGCAGCCATTTGATGGTGCAGGAATGGTGTACGGGACGGAGGCTATACCGAGAGAATATGGTCAAGGCTTACACCATGAATGGCTGCACATGCATATTGGCGGTGGGTTTGAAAGAGCAAATTAA 912 48.57 MDPPLVNETSFSTVNPSVYSLAEIWPFGEEAEGGVLGLRIGSLCRNLGGFAEGSGNRDGSAEESTVTEQSGSGGRRKRKDVSSEDESSKMVPKSGATYLNDFNGKLMKLGESRDENCRPKAEVEVETNSGDGTKPDEPSAKPSVPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQELVPGCNKVTITARLVKLFEHHKLTLWLQVIGKAFVLDEIINYIQSLQHQVEFLSMKLEAVNSRMNVIPGIEGHTTKDNGLQPFDGAGMVYGTEAIPREYGQGLHHEWLHMHIGGGFERAN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3173837 3175804 - BLOR06682 Blo15g00288 70688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00288 303 Pfam Helix-loop-helix DNA-binding domain 162 230 IPR011598 GO:0046983
Blo15g00288 303 Coils Coil 226 246 - -
Blo15g00288 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 229 IPR011598 GO:0046983
Blo15g00288 303 MobiDBLite consensus disorder prediction 110 147 - -
Blo15g00288 303 Gene3D - 158 251 IPR036638 GO:0046983
Blo15g00288 303 MobiDBLite consensus disorder prediction 53 97 - -
Blo15g00288 303 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 211 302 - -
Blo15g00288 303 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 195 - -
Blo15g00288 303 MobiDBLite consensus disorder prediction 72 87 - -
Blo15g00288 303 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 211 302 IPR024097 GO:0006355
Blo15g00288 303 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 195 IPR024097 GO:0006355
Blo15g00288 303 MobiDBLite consensus disorder prediction 110 131 - -
Blo15g00288 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 249 IPR036638 GO:0046983
Blo15g00288 303 CDD bHLH_AtBPE_like 148 248 - -
Blo15g00288 303 SMART finulus 164 235 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00288 - - - csv:101215588 368.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00032 Blo15g00288 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00288 Blo-Chr15:3173837 Blo06g00398 Blo-Chr6:23064680 3.38E-44 dispersed
Blo01g00412 Blo-Chr1:4665092 Blo15g00288 Blo-Chr15:3173837 4.15E-74 wgd
Blo13g00032 Blo-Chr13:522851 Blo15g00288 Blo-Chr15:3173837 1.94E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g472 . . Bda06g00566 Bda15g00591 Bpe12g00567 . . Bma12g01018 . . Cma10g00164 Cma11g00175 Car10g00154 Car11g00126 Sed08g0185 . Cpe04g01526 Bhi02g00374 Tan09g2179 Cmetu02g1551 . Hepe09g0154 . . Cla06g01622 Cam06g1802 Cec06g1853 Cco06g1859 Clacu06g1762 Cmu06g1706 Cre06g2524 . . Cone13ag0099 Cone19ag0102 . . . . Blo13g00032 Blo15g00288 . . Bpe07g00808 . . Bma08g00196 . Cmo10g00176 Cmo11g00134 . . . . . Cpe18g00815 . . . . . . . . . . . . . . Lsi06g01503 Csa01g00196 Chy02g02535 Cme02g01919
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004894 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13316 PF00010 HLH 1.50E-05 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00288 Blo_Chr15 FPKM 109.200096 112.271233 0.185214 0.351886 3.167055 4.079077 3.697072 0.640418 0.653995 0.798328