Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00292 ATGTCGCAATTATCTTCTCCTCCTCCGATCTCCGACGACCACCTATCCTCCCCTGAACCACTACGAGATAACCACAGTCCCAATGATTCTGCCACCTTTCAAAACGAAAGCGCCACAGCCACAACCCCTAGTAAACCCTCCTTTCCAACGAGGACTAACCGTCCATCCCGTGCCTGTACTATTCGAGCTGCTGAGAGGCTCTTGGCGGCTCAGTCTGTGGTCGAACGGAAACCAAAGGCAAAAAAGGAGCAGCGGAGTGACCAGAATGAGGAGACGCCGCTGCATCTGCAACAGCAACAATGCAGCAAGATAGTGACACAGCTGGTGGAGCCGCCTCCACCTTCGCAATTGCCGAGGTGGAACCTCCGGTCAATGTGGGAATTGTCTTCTGTACTTAATTTTTTGAATGTTTTTAGGCCACTGTTGAATATAAATGTTGAGTTTTCGGCAGAAGAGTTTGAGTCTGCATTGATTTCACCGAACGACACTTTGAGTGATGTTCATATTCCATTGTTGAAGGCAATTCCTCCTGTTACGAGATTGGCACTTACACGGGAAACCTGGGTGACTGTCTTATGCAGAAAATTGAGGGACTGGTGGCATTGGGTAGCAGATGGAGATCTACCCCTTGTTGCTTCACATGGGGCTGAGGTTGAAGTGTATAGAAGTCTTGATCCTGGGGTTCGTGTGGTCATCTTGAAAGCACTCTGTGACATTCGTGTTGAGCGAGAAGATATTCGGAACTATATTGACAACTCACTCAAGCATGGTGTCCAACTCTCGGCATTTCGGAAAGAGCGTATTGGGGGTGATTCCCATGGAATTTTTTACTGGTATGAAGAGGATTCCTTAGTTGGCCATCGATTATATCGCGAGATTAGGAAAGTTGAGATGAAAAAAACAAAGGCAAGAGGTTCACAAATCCTTCCTAGTTCAACATACCAATGGGAAACCGTTGCAACAAGTTTTGATGAATTCCAAGATGTATCTGAAAAGCTATTTTCAAGTAAAAATAGATCGGAGGTTTCACTTGGTAAAAAACTGAAGATAGATATGCTTCCTGAGATTGAAAAGGTTCATAAGAGGAAAGAGAGGTTGCTGAAGAAACAACATAGACAAGCTCTTCTTCTCGATAATTTCATCAATATAGAAGATCTTGGTCCAGGTCGTTCCCTTCGAGATAGAAAACCTGTCACCTACACTTTCGATGATTACGATCGATCCATCAACGAGGCGATCAAGATAACCAAACGAAAACAACCGTCCCCTGAAACCGATAATAGAAGGGAAATATTCGAGAAACCCGAGCCCTCCTCTAATGGAAAATGGACTGGTCCACCCTATGAGGCGGAAAATTTCACTTTCAGTGCTCTGTCTCCTGACTCGCTTGAATACGAAGAAACTGAAGAAGACCAAAAGATGGAAGATTTGGATCGCAGCAATCGGCGAAGACAGAGGCCTCAAAAATATTCCGAGGAGTTTGTTGAGGCTGTATCGGACAATGATGCAGATAGTGATGATGATATAGTTGGCGAAGCGATATATGATGAGGAGTATCTTCGGCAGCGTAAACAGAGGAAGAAAACATCAAGTAGCTCTGAAGGAGATGAGGAGTATCACTACGAGGAAGAAAATGGGGAAGATGAGGAAGAAGAAGAAGAAGATGATGATGAATTTTCCCCAAGTGCCAGTGATGATAGCAACGAACGGCGAAAGCTAAGAAAATTGCCCAGACACCCCCGGAGGGCATCGAAATTAAGATCGGTCGATGAACTCCAATCTGGTTTAAGGCGGAGTAAAAGGGCAAGAAAAAACCGGATAAATTATCGACAGTACGAAATGTCGGAATCAGAACCGGAGTCTACAAAAGCTGAAAATTCGAATGAGTCCGATCAACGCACCGAAGCAGAGGCTAGTGAAAATGGAGATTTTTCAACGGAGGAAAGTCCAGATTCTGATGGCGGTAATGAAGAGGAGGAAATAAAAAAGGGACAGTCCATCAAGAGCTTCCCTGAGGAGGCAGGTACAAATAATCAGACACTAGAAAAATCATCAAGTAGCCCAGGCCAGGATGAAGCCAATGGTATACAAGGGAGACGTTTTCTCGACCTAAACGAGCTTGCCCCGGGGTCTGGTTTTGACGACGGACCTAACTCAGTTACGAAAGACGATGATCAAACAAATGACTTCTAA 2193 44.96 MSQLSSPPPISDDHLSSPEPLRDNHSPNDSATFQNESATATTPSKPSFPTRTNRPSRACTIRAAERLLAAQSVVERKPKAKKEQRSDQNEETPLHLQQQQCSKIVTQLVEPPPPSQLPRWNLRSMWELSSVLNFLNVFRPLLNINVEFSAEEFESALISPNDTLSDVHIPLLKAIPPVTRLALTRETWVTVLCRKLRDWWHWVADGDLPLVASHGAEVEVYRSLDPGVRVVILKALCDIRVEREDIRNYIDNSLKHGVQLSAFRKERIGGDSHGIFYWYEEDSLVGHRLYREIRKVEMKKTKARGSQILPSSTYQWETVATSFDEFQDVSEKLFSSKNRSEVSLGKKLKIDMLPEIEKVHKRKERLLKKQHRQALLLDNFINIEDLGPGRSLRDRKPVTYTFDDYDRSINEAIKITKRKQPSPETDNRREIFEKPEPSSNGKWTGPPYEAENFTFSALSPDSLEYEETEEDQKMEDLDRSNRRRQRPQKYSEEFVEAVSDNDADSDDDIVGEAIYDEEYLRQRKQRKKTSSSSEGDEEYHYEEENGEDEEEEEEDDDEFSPSASDDSNERRKLRKLPRHPRRASKLRSVDELQSGLRRSKRARKNRINYRQYEMSESEPESTKAENSNESDQRTEAEASENGDFSTEESPDSDGGNEEEEIKKGQSIKSFPEEAGTNNQTLEKSSSSPGQDEANGIQGRRFLDLNELAPGSGFDDGPNSVTKDDDQTNDF 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3247007 3254692 - BLOR06686 Blo15g00292 70692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00292 730 MobiDBLite consensus disorder prediction 537 562 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 1 57 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 670 693 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 21 57 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 641 655 - -
Blo15g00292 730 PANTHER REMODELING AND SPACING FACTOR 1 32 728 IPR028938 GO:0006355|GO:0031213
Blo15g00292 730 MobiDBLite consensus disorder prediction 415 730 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 497 513 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 474 496 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 583 598 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 514 536 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 606 640 - -
Blo15g00292 730 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 219 251 IPR028942 -
Blo15g00292 730 Pfam DDT domain 130 175 IPR018501 -
Blo15g00292 730 PANTHER DDT DOMAIN-CONTAINING PROTEIN DDR4 32 728 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 415 436 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 70 99 - -
Blo15g00292 730 MobiDBLite consensus disorder prediction 75 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00292 - - - csv:101216302 930.628
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00029 Blo15g00292 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01356 Blo-Chr1:51525431 Blo15g00292 Blo-Chr15:3247007 1.55E-98 transposed
Blo13g00029 Blo-Chr13:466101 Blo15g00292 Blo-Chr15:3247007 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g478 . . Bda06g00560 Bda15g00584 Bpe12g00564 . . Bma12g01014 . . Cma10g00169 Cma11g00171 Car10g00158 Car11g00129 Sed08g0189 . Cpe04g01523 Bhi02g00367 Tan09g2175 Cmetu02g1218 . . . . Cla06g01619 Cam06g1798 Cec06g1848 Cco06g1856 Clacu06g1758 Cmu06g1702 Cre06g2520 Cone2ag0872 Cone16ag0138 . . . . . . Blo13g00029 Blo15g00292 . . Bpe07g00803 . . Bma08g00199 . Cmo10g00181 Cmo11g00137 . . . . . Cpe18g00813 . . . . . . . . . . . . . . Lsi06g01499 Csa01g00200 Chy02g02531 Cme02g01915
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003679 3 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13318 PF02791 DDT 1.20E-06 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00292 Blo_Chr15 FPKM 16.10692 21.644466 14.491998 14.931163 12.597703 12.211698 12.133692 20.49929 21.15855 21.00259