Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00295 ATGGGCGGCGCCGCCGACGATTCTCGTAAATGCTCTGTTGCCTCCAAGGAAGATGAGGCGGCGAAGGAAACGCCGTCCGCCACTCCCGTTGCGGACTCTCTGTCCCGCGTTCTGCTCTCCGACGCTCCGATTCTCTTCCTTGTTAAGTTTCACAAAGCGCTGCGGTCGGAGCTCTCGGATCTCCGCCGTCTGACTCTGTCGGCGTCGGAGAATGGATCCTACATCGCTGACCTGATTCCGGAGTTACTGCGGCGGTTCGAGCTCCTTAAAATTGCTTATAAGTACCATTTTGCCGCAGAAGAAGAGGTTATCTTCCCTGCTTTAGATGTTCATACAAAAAATGTAGCAGGTACGTATTTACTAGAACACGAGAGCATCGATGATCTCTTCAACTCCATTTTTCATCTCTTGGATGAATTAAAGGCGGAAGAGACAAATATTATCAAGCCATTTCAAGAACTTGTACTCTGTTTGGGAACAATACAATCCTCTATGTGCCAACATATGCTTAAGGAAGAAGAGCAGGTTTTTCCATTGCTGATGCAACAGCTCTCGCCTGCAGAGCAGGCTTCACTGATGTGGCAGTTCGTCTGTAGTGTTCCTGTAATATTGCTAGAGGATCTCTTGCCATGGATGATGTCTTTTCTATCTTCAGATGAACAAGGAGAAGTTAAACAATGCATTGAGGATATGGTACCCGGAGAAACTTTACTGCAAGAGGTAGTGGTATCTTGGCTTGGTGGCAACAAAAGACCCCCTACTGAAGTGATCATCAGAGATCAATGTCGAGGTGGGAATGAAGAAATAATGTCTCTACAAAACAATAATGGGGAAAACCCCATAGACGGTCTTCATCTTTGGCATAGTGCAATAATTAAAGACCTGAAGAAAATTTTAGAGGAGCTCTCACAATTAAGATTGAAGGAAATTTTGGAGGAGGTCTTACAATTAAGAAGAGCTAATCCTTTGCCAAATTTAGATTCCATCGTTGTACGCATTAAATTCCTTGCCGATATTGTTATATTCTACAGCAATGCGCTGGACAAATTCTTTTATCCAGTAATAAATCAACTTGCTGATGTCTCCCTGCCTTCCATAAATGAAACATTTCTTCAAGCCTGCCACATCGAAGGTCTACAAAGGCTATTGCATTGTAATGTTCAAGACAGTACAACCTTGTCGGAGTTTTTGCAGAATCTTTGCAGGGAACTTGAGTCTTTTTTGGAGGGAATTAAGAAAAAGATCTCTTTTCTTGAAGCGGAGGTTTTCCCTGACATCAGAAAGAATTGCAACTATAAAATGCAGCAGCAGCTTTTGTATATGAGTCTCCACACGTTGCCACTTGGGTTGCTAAAGTGTGTCACTACATGGTTTTCTGCTCACTTATCTGAGGGTGAACTCAGGTCTGTCTTTCACAAAATACAAACGCAAGGATCCTGGGTGGATAATTCATTTGCATCCCTTTTACACGAGTGGATCCGCATTGCATATTTGGGAAAAGCCTCTCCTGAGAGTTTTGGATTACATTTGGAGCAAATGTTTAAGACTAGGAACTTTTTTGTAAATGAGAAATTCAATGGAGGTTCTGGATCTTCATCCTTAACCTTAAACGTCTGGTCTGGTGAAGCATCAAGCTCCGTGGGAGTTGAAACATCATACTCCAGCGGTATCAATACGCATATATATTTTCCAGAAGCAATGAAGACATCACAACCCTTTCCAAAATTGCATGACGAGAATCACCCAGATGGGTCGCCAATAGATATTGTCTTGTTCTTCCACAAAGCACTAAAGAAGGATCTGGATTACCTAGTATCTTGTTCTCTTCAACTGGCTGAAAAGGTTGAAATCCTTGATGATTTCAAAAGACGATTCCAGCTTTTCCGTGTTTTACATCAGATTCACAGTGATGCAGAGGACCAAATTGCTTTTCCGGCATTGGAGACAAAAGGGGAAGTGGAGAATATTTGTGACTCTTACATCATCGATCATAAGTTGGAAATGGAACACTTTGGTAACATATCCTCCATCCTAGATGAGTTGACTCAACTGAATGCTTCAGCTTTAGATATCGGTGTGAGCTCAAAGAAGACTAACCCTGTAATGTCCAGACATGAGCAGATTTGTCAAGGACTACATGACATGTTCAAATCATTGCACAAGTTACTCATTGACCATATTGATCATGAAGACATTGAAATTTGGCCTTTGTTTAAGGAAAGCTTCTCCATTGAAGAACAGGAGCAAATCATTGGATCCATCCTTGGAAGAACTAGATCCGAAATGTTGCAAGATATGATCCCGTGGTTAATGGAGTACATAACGCCTGAAGAACAGTGGCAGATGATGTCTTTATGGCGCAAGGTTACTAGACATACCATGTTTGATCAATGGTTAGCAGAATGGTGGGAGGGCATTGGTGCGGCTAAGGTGACAGAAGTGTCTGATGTCCCTTCTACACTGGTTGAAGATCCCTTGGAGTTAGTCTTGGCATATCTCTCAAAGGAAGGTCATACAGTGAATGGCGGAAATCTGAATCAGAAATGTGATAGTTTCTCGCAAGAGCATCTCAATTACTCTGAGCAGCTGGAAATGTGTATTAATTACAAAGTAAAGAATACAATTGCTGATCCATACACTGAGAAATGTTTGGACGATGCTATAATCGATTTTGAGAGTGACGAGAAAAAGAAGGTGGCTGATTTCAACGACCATGTCCCAGAATTGAGACAGCATTTGAAAGAAAGTGTAAAGTTGAAACATGAAGAACATATTCTTGCAATGAGTCAAGAAGATCTGGAGGCTGCATTAAGAAAAGTATGCAGTGATTCTTCCTTGAATTTGCGAGAAAAATCGTTTATAATGCAGAACTTTATGACGAGCACTTGGACGCTAAAACAAAGACTTACACATTCAGAAATGAATGTATCAAGAGATGACCAAGGAATTCAAGGTCTGCAGCCATCTTACAGAGACTCCCATGACCAAACATTTGGCTGCAAACATTATAAAAGAAACTGTAAGCTTCTCGCTCCCTGTTGCAACCAGCTGTATGTATGCATACACTGTCACGATGAGGAGACTGGTCACACGGTAGAGAGAAAGCATATAACAAAGATGCTGTGCATGAAATGCTTGATAGTTCAGCCAATTGGAAGCACATGTTCGACAGCCTCCTGCGCAAGTTTTTCTATGGCCAAATACTTTTGCCGGATATGCAAATTGTTTGATGATGACAGGAAAATCTATCACTGCCCCTACTGTAACATATGCAGGGTGGGGGAGGGATTGGGTAATGACTACTTTCACTGCATGAACTGCAATGCCTGCATGTCTCAGACACTTTCAGACCACATTTGTAGAGAAAAGTGTTTGGAGGACAATTGTCCGATTTGCCGTGAATATATTTTCACGTCTACTGCTCCAGTGAAGGCATTACCCTGTGGTCATATAATGCATTCGGATTGTTTTCGGAAATACACTGAAACTAACTACATTTGCCCCATTTGTAGCAAGTCCCTTGGAGATATGCAGGTCTACTTTATGATGCTCGATACACTCGTCGAAGAAGAGAAGATTCCGGCTGAATATGCGGATAAAACGCAGGCCATACTATGCAATGATTGTGGGAAGAGAGGAACAGCTCGCTTCCATTGGTGTCACCTGAAATGCCCACAATGTGGTTCATACAATACCAGACCTTTGTGA 3708 42.15 MGGAADDSRKCSVASKEDEAAKETPSATPVADSLSRVLLSDAPILFLVKFHKALRSELSDLRRLTLSASENGSYIADLIPELLRRFELLKIAYKYHFAAEEEVIFPALDVHTKNVAGTYLLEHESIDDLFNSIFHLLDELKAEETNIIKPFQELVLCLGTIQSSMCQHMLKEEEQVFPLLMQQLSPAEQASLMWQFVCSVPVILLEDLLPWMMSFLSSDEQGEVKQCIEDMVPGETLLQEVVVSWLGGNKRPPTEVIIRDQCRGGNEEIMSLQNNNGENPIDGLHLWHSAIIKDLKKILEELSQLRLKEILEEVLQLRRANPLPNLDSIVVRIKFLADIVIFYSNALDKFFYPVINQLADVSLPSINETFLQACHIEGLQRLLHCNVQDSTTLSEFLQNLCRELESFLEGIKKKISFLEAEVFPDIRKNCNYKMQQQLLYMSLHTLPLGLLKCVTTWFSAHLSEGELRSVFHKIQTQGSWVDNSFASLLHEWIRIAYLGKASPESFGLHLEQMFKTRNFFVNEKFNGGSGSSSLTLNVWSGEASSSVGVETSYSSGINTHIYFPEAMKTSQPFPKLHDENHPDGSPIDIVLFFHKALKKDLDYLVSCSLQLAEKVEILDDFKRRFQLFRVLHQIHSDAEDQIAFPALETKGEVENICDSYIIDHKLEMEHFGNISSILDELTQLNASALDIGVSSKKTNPVMSRHEQICQGLHDMFKSLHKLLIDHIDHEDIEIWPLFKESFSIEEQEQIIGSILGRTRSEMLQDMIPWLMEYITPEEQWQMMSLWRKVTRHTMFDQWLAEWWEGIGAAKVTEVSDVPSTLVEDPLELVLAYLSKEGHTVNGGNLNQKCDSFSQEHLNYSEQLEMCINYKVKNTIADPYTEKCLDDAIIDFESDEKKKVADFNDHVPELRQHLKESVKLKHEEHILAMSQEDLEAALRKVCSDSSLNLREKSFIMQNFMTSTWTLKQRLTHSEMNVSRDDQGIQGLQPSYRDSHDQTFGCKHYKRNCKLLAPCCNQLYVCIHCHDEETGHTVERKHITKMLCMKCLIVQPIGSTCSTASCASFSMAKYFCRICKLFDDDRKIYHCPYCNICRVGEGLGNDYFHCMNCNACMSQTLSDHICREKCLEDNCPICREYIFTSTAPVKALPCGHIMHSDCFRKYTETNYICPICSKSLGDMQVYFMMLDTLVEEEKIPAEYADKTQAILCNDCGKRGTARFHWCHLKCPQCGSYNTRPL 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3279227 3285577 + BLOR06689 Blo15g00295 70695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00295 1235 CDD RING-H2_Pirh2 1128 1171 - -
Blo15g00295 1235 CDD Hr-like 47 178 - -
Blo15g00295 1235 ProSiteProfiles Zinc finger CTCHY-type profile. 1065 1128 IPR017921 -
Blo15g00295 1235 Gene3D nmb1532 protein domain like 579 763 - -
Blo15g00295 1235 SUPERFAMILY Zinc hairpin stack 1066 1121 IPR037275 -
Blo15g00295 1235 Pfam Ring finger domain 1127 1170 IPR001841 -
Blo15g00295 1235 Gene3D nmb1532 protein domain like 46 198 - -
Blo15g00295 1235 Pfam Zinc-ribbon 1176 1233 IPR039512 -
Blo15g00295 1235 ProSiteProfiles Zinc finger CHY-type profile. 993 1062 IPR008913 GO:0008270
Blo15g00295 1235 ProSiteProfiles Zinc finger RING-type profile. 1129 1171 IPR001841 -
Blo15g00295 1235 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 1233 - -
Blo15g00295 1235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1173 IPR013083 -
Blo15g00295 1235 SUPERFAMILY CHY zinc finger-like 991 1056 IPR037274 GO:0008270
Blo15g00295 1235 Coils Coil 401 421 - -
Blo15g00295 1235 Pfam CHY zinc finger 1000 1075 IPR008913 GO:0008270
Blo15g00295 1235 SUPERFAMILY RING/U-box 1117 1175 - -
Blo15g00295 1235 CDD Hr-like 588 736 - -
Blo15g00295 1235 Gene3D - 1199 1235 - -
Blo15g00295 1235 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 34 1233 - -
Blo15g00295 1235 MobiDBLite consensus disorder prediction 1 27 - -
Blo15g00295 1235 Pfam Hemerythrin HHE cation binding domain 46 180 IPR012312 -
Blo15g00295 1235 SMART ring_2 1129 1170 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00295 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 1305.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01360 Blo-Chr1:51674407 Blo15g00295 Blo-Chr15:3279227 1.16E-49 dispersed
Blo13g00170 Blo-Chr13:6011704 Blo15g00295 Blo-Chr15:3279227 1.32E-14 dispersed
Blo15g00295 Blo-Chr15:3279227 Blo02g00584 Blo-Chr2:10803319 4.00E-08 dispersed
Blo15g00295 Blo-Chr15:3279227 Blo15g00066 Blo-Chr15:557250 5.31E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g483 . . . . . . . . . . Cma10g00305 . Car10g00290 . Sed08g0191 . . Bhi02g00363 Tan09g2172 Cmetu02g1853 . Hepe09g0145 . . . . . . . . . . . Cone13ag0096 Cone19ag0099 . . . . . Blo15g00295 . . Bpe07g00800 . . . . Cmo10g00326 . . . . . . Cpe18g00810 . . . . . . . . . . . . . . . . . .
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00295 Blo_Chr15 FPKM 1.785088 2.296075 1.086167 1.561675 0.0 4.257834 4.054052 8.419819 10.033611 12.008458