Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00297 ATGTTAAATGGAAAGAAGATCAGCAACCTTTCAAGTGGTGCAAGGTCATTTTTCCTTTCCGGATCACGATCTAATGCAGCCGATGGAAGTTCATTTGTCTTCTCTGAAGATGAATCCTGTGTTTCCAAAAGACAGCAATTTATAAATGAATCTTTCGGCACAAAGCAGACACCCCCCTTGGCTTTGAAAATTTCTGCTAAAGTAGAGACTTTGGATCCGAGAGATGTAGCCAAGGTAGCCAAAGGAGTTGTACATTCATCCATTTCTTCTGGAAAACCAGACTCGGTAAATCAGTCAAGCAGCCCGGATTCTTCTCTCATCATTGCTGACCAGTTTGTTAAGGTGAGCATTGCAGCTGTGAACTTCCTGTCAGATTTAGTAAATTATAAGTTTCCTTTGTCGAATGGGGGTGGAGTACTCATCTCGGCAAAGAATTGCATGAATGATCCGCTTTCAAATGTCAAATCATCGCAAGTGAAGCATGTTAAAAGAGAAAACTTTTCTGGTGTTCACCCAAATTCATCTTCGGAGACAGCAGTAAGTTCTAAATCTAGAGGTAACAATTGTAATGGGTCAAAAGGTAAGGGCGATCAGTCTGGCTCTGTCAGAGATTTGAAACAAGTTCAACATACTGAAACTGACAGCACATTTTCTGATAGTCGTGCTAGAAAAAATTATCGTCAGAAATCAAAAGCACATTCTGATCGATCAGTGTCTAATTATGATGCTAATTTACAGTCAGCAGATGTAGAGTATGTTTCTCAAAGTTTCAACCGTGTAAAGACTGCATCAGCAGTGGTCCCGAAGACGAAGCACTTTGGAAATGCATCACATGTTTTGAAAAATGTTTCTCATATTCTCAGAGGGCATAATTGGGGCCCTTCTGTTGAAGAGGCTCTTGGAAAGCTTAATTGTTCGCTAGATGCCTTTCAAGCCAACCAAATTTTAAAGCAGCTACAAGATCATTCGCTCGCACTTGGCTTTTTCTATTGGTTAAAGCGGCAATCAGGCTTCAAGCACGATGGCCACACTTACACCACTATGGTCGGCATTCTTGGCCGGGCTAGACAGTTTGGTGCAATGGACAGATTACTTGATCAGATGGTCAATGAAGGTTGCCGGCCTAATGTCGTGACTTATAACCGTCTGATTCATAGTTATGGTCGAGCTAACTATTTGAAAGAAGCTATTTGCGTATTCAATCAAATGGACAAAGTTGGATGCGAACCAGACCGTGTTACCTTCTGCACACTCATAGACATCCATGCCAAAGCCGGGTTTCTCGATATTGCAATGTGCATGTATAGAAGAATGCTGGAGGCTGGACTTACCCCTGATACTTTTACCTACAGTGTCATAATCAACTGCCTTGGAAAAGCCGGTCATTTAAATGCTGCCCATCGGATTTTCTGCGAAATGGTCGATCAGGGCTGTGTTCCTAATCTAGTCACGTATAATATTATGATTGCTCTTCAAGCCAAAGCGAGGAACTATCAAATTGCATTGAAGCTTTACCGAGACATGCAGAATGCGGGTTTTCAACCCGACAGAGTGACTTACAGCATAATTATGGAGGTGCTTGGCCATTGTGGGAATCTTGAGGAGGCAGAAGCTCTGTTTGTTGAGATGCGACTGAAGAATTGGGTGCCAGACGAACCGGTTTACGGCCTTCTTGTAGATTTATGGGGAAAATCTGGTAATGTTGAAAAAGCTTGGGAGTGGTATAATGCTATGCTTGATGCCGGTTTGAAGCCGAACGTCCCGACCTGCAATTCTATGCTCAGTGCTTTTCTTCGAGCCCACAGACTTTCCGATGCCTACAACTTACTGCAAACAATGGTGTCTTTTGGTCTAAACCCTTCTCTCCAAACATATACTTTACTTCTCAGTTGCTGTACAGATGCACAATCGGCATTCGACATGGGATTTTGCTGCGAACTAATGGCCATTACAGGCCACCCAGCCCATGCATTTCTAGTTTCGCTGCCCTCACCTGGACCGACAGGCCAAAATGTTCTAGATCACACAAGCAAATTTCTAGATATGATGCACAGTGAGGATAGAGAGAGCAAGAGAGGGATTGTAGATGCAGTGGTTGATTTTCTTCACAAATCGGGGCTTAAGGAAGAGGCCGGCTCTGTTTGGGATTCGGCCATGCTGAAAAATGTGTACCCAGATGCCGTAAAGGAGAAGAGCTCTTGTTATTGGCTTATCAATCTGCACGTCATGTCAGATGGGACGGCAGTGACTGCTCTGTCCAGGACGCTGGCTCGGTTCCGCCGGCAAACCATGAGGTCGGGGGTGGGACCTGCCCGGATCGACATTGTGACTGGCTGGGGCAGACGGAGCCGGGTGACCGGAACTTCACTTGTCCGGCGAGCCGTGCAAGAGCTTTTGAGTATTTTTAGCTTTCCTTTTTATACTGAGAATGGAAATTCAGGATGTTTTGTGGGGTGCGGGGAGCCTCTCAACAGATGGCTGCTGCACTCTTGTGTGGAGAGAATGCATTTACTCTAG 2517 44.7 MLNGKKISNLSSGARSFFLSGSRSNAADGSSFVFSEDESCVSKRQQFINESFGTKQTPPLALKISAKVETLDPRDVAKVAKGVVHSSISSGKPDSVNQSSSPDSSLIIADQFVKVSIAAVNFLSDLVNYKFPLSNGGGVLISAKNCMNDPLSNVKSSQVKHVKRENFSGVHPNSSSETAVSSKSRGNNCNGSKGKGDQSGSVRDLKQVQHTETDSTFSDSRARKNYRQKSKAHSDRSVSNYDANLQSADVEYVSQSFNRVKTASAVVPKTKHFGNASHVLKNVSHILRGHNWGPSVEEALGKLNCSLDAFQANQILKQLQDHSLALGFFYWLKRQSGFKHDGHTYTTMVGILGRARQFGAMDRLLDQMVNEGCRPNVVTYNRLIHSYGRANYLKEAICVFNQMDKVGCEPDRVTFCTLIDIHAKAGFLDIAMCMYRRMLEAGLTPDTFTYSVIINCLGKAGHLNAAHRIFCEMVDQGCVPNLVTYNIMIALQAKARNYQIALKLYRDMQNAGFQPDRVTYSIIMEVLGHCGNLEEAEALFVEMRLKNWVPDEPVYGLLVDLWGKSGNVEKAWEWYNAMLDAGLKPNVPTCNSMLSAFLRAHRLSDAYNLLQTMVSFGLNPSLQTYTLLLSCCTDAQSAFDMGFCCELMAITGHPAHAFLVSLPSPGPTGQNVLDHTSKFLDMMHSEDRESKRGIVDAVVDFLHKSGLKEEAGSVWDSAMLKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLARFRRQTMRSGVGPARIDIVTGWGRRSRVTGTSLVRRAVQELLSIFSFPFYTENGNSGCFVGCGEPLNRWLLHSCVERMHLL 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3296822 3299338 - BLOR06691 Blo15g00297 70697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Blo15g00297 838 MobiDBLite consensus disorder prediction 216 236 - -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Blo15g00297 838 Pfam PPR repeat family 375 421 IPR002885 -
Blo15g00297 838 Pfam PPR repeat family 585 632 IPR002885 -
Blo15g00297 838 Pfam PPR repeat family 480 526 IPR002885 -
Blo15g00297 838 Gene3D Tetratricopeptide repeat domain 443 578 IPR011990 GO:0005515
Blo15g00297 838 PANTHER BNAA07G31720D PROTEIN 1 838 - -
Blo15g00297 838 Gene3D - 719 817 IPR036063 -
Blo15g00297 838 MobiDBLite consensus disorder prediction 155 240 - -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Blo15g00297 838 SUPERFAMILY HCP-like 422 584 - -
Blo15g00297 838 Gene3D Tetratricopeptide repeat domain 200 442 IPR011990 GO:0005515
Blo15g00297 838 Gene3D Tetratricopeptide repeat domain 579 641 IPR011990 GO:0005515
Blo15g00297 838 Pfam PPR repeat 442 474 IPR002885 -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Blo15g00297 838 SUPERFAMILY SMR domain-like 736 816 IPR036063 -
Blo15g00297 838 Pfam PPR repeat 554 583 IPR002885 -
Blo15g00297 838 Pfam PPR repeat 344 373 IPR002885 -
Blo15g00297 838 SMART SMR_2 735 821 IPR002625 -
Blo15g00297 838 MobiDBLite consensus disorder prediction 168 215 - -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Blo15g00297 838 ProSiteProfiles Smr domain profile. 738 819 IPR002625 -
Blo15g00297 838 PANTHER OS03G0856100 PROTEIN 1 838 - -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 483 516 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 518 552 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 589 621 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 413 447 IPR002885 -
Blo15g00297 838 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Blo15g00297 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00297 - - - qsu:112017637 1161.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo13g00026 Blo15g00297 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00953 Blo-Chr4:11596760 Blo15g00297 Blo-Chr15:3296822 6.33E-07 dispersed
Blo15g00297 Blo-Chr15:3296822 Blo15g00632 Blo-Chr15:16590850 2.22E-41 dispersed
Blo06g00540 Blo-Chr6:27752824 Blo15g00297 Blo-Chr15:3296822 6.35E-09 transposed
Blo13g00026 Blo-Chr13:424844 Blo15g00297 Blo-Chr15:3296822 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00297 Blo_Chr15 FPKM 42.295174 45.040462 30.442444 30.83169 20.515978 15.112664 19.751608 26.664623 25.778297 29.701925