Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo15g00325 ATGAGTCAGTGCACTGTACCAAGTTGGAATCTAAGCCCCAGAAGAGAAGAGCAAGTTGAACCAGAAGAAGGAAATAGATCCTCCCACGTGCACTCTTTGCAGAACCACCACCACAGCCCCTCTCTCTCTGTTTCTCCTCACCTTTATGAAATTGCCGAGGAGCTAACGTGGGAAAATGGTCAGTTAGCCATGCATGGGTTGGGTGGGCTACCTCCATGTCCTCCAGCCAAACCTGCATGGTGCCAGCCAAGGGACACACTAGAGTCCATAGTCCGCCAAGCCACAATGCACAAACAAACCCCACCTCCAAATCTCCAGGCCCAGGTACAGGCCCAAGTTCATGCCAGCTCAGCAGCCACCGGCCGAAAATGTGGCCGGAGCTCCTTGAAGGACGCAATTGATCCACCGGTGGTTGGAAAACGCCCACGTTCAGATTCTGATCAAGGTGGAAGAAATAATATTTGTTGCAGTAGTAGTATGCAAGACCTTAGCACTTGTGCTAGTGCAAGTACCACGTTTTGTAGGGAGAATGACACTACTTTAATGACATGGGCATCCTTTGAATCGCCTCGGAGTTTCAAGACAAAAGTGACTGAAGACGATTTAGCTTGGCTCAATCGATCGGAGAAGCAAGAGGAAGAACTTGATACCAATTGCGAAACAGGACGATCAAACTCCACAAGAAGAAGCCGAGCAACTGCCGTTCATAATCAATCCGAGAGGAAACGACGAGATAGGATTAACCAGAAGATGAAAGCTCTGCAAAAGTTAACCGACAAAGCTTCGATGTTGGATGAGGTGATCGAATACTTGAAACAACTTCAAGCGCAAGTCCAGTTGATGACCATGAGAAATATGCCTCCAATGATCATGCCTTTGGGAATCCAGCAGCAACTTCAAATGTCCATGATGGCTCGTATGGGCATGGGGCTTGGGCTCGGCATTGGCAACATGGCTCGAACCACTTCTCAGCCACTGACTCAGTTTGTTCACCCTACTCCGACATTCGTTCCACCCCCTTTTTCGATGCATCCCATGGTTCAGCCACAAGCTAAGCTGGATCCTAGAGCCAATGCTTCTCTTCCTCTTCCCGATCCTTTTTGCGCCTATCTAGCACAACAGACAATGAATATGGATCTTTATAATAAGATGGCAGGGCTATATCGCCAACAGGCGAATCCGAACACGCAGGCAGGCAGCAGTCCATCTCAGTCAAACAATGTACAAAGAAATTAG 1236 48.46 MSQCTVPSWNLSPRREEQVEPEEGNRSSHVHSLQNHHHSPSLSVSPHLYEIAEELTWENGQLAMHGLGGLPPCPPAKPAWCQPRDTLESIVRQATMHKQTPPPNLQAQVQAQVHASSAATGRKCGRSSLKDAIDPPVVGKRPRSDSDQGGRNNICCSSSMQDLSTCASASTTFCRENDTTLMTWASFESPRSFKTKVTEDDLAWLNRSEKQEEELDTNCETGRSNSTRRSRATAVHNQSERKRRDRINQKMKALQKLTDKASMLDEVIEYLKQLQAQVQLMTMRNMPPMIMPLGIQQQLQMSMMARMGMGLGLGIGNMARTTSQPLTQFVHPTPTFVPPPFSMHPMVQPQAKLDPRANASLPLPDPFCAYLAQQTMNMDLYNKMAGLYRQQANPNTQAGSSPSQSNNVQRN 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3768687 3770563 - BLOR06719 Blo15g00325 70725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo15g00325 411 Gene3D - 226 285 IPR036638 GO:0046983
Blo15g00325 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 284 IPR011598 GO:0046983
Blo15g00325 411 MobiDBLite consensus disorder prediction 1 42 - -
Blo15g00325 411 MobiDBLite consensus disorder prediction 116 152 - -
Blo15g00325 411 PANTHER TRANSCRIPTION FACTOR PIF7 3 406 - -
Blo15g00325 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 286 IPR036638 GO:0046983
Blo15g00325 411 CDD bHLH_AtPIF_like 231 288 - -
Blo15g00325 411 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 406 IPR031066 -
Blo15g00325 411 MobiDBLite consensus disorder prediction 208 244 - -
Blo15g00325 411 Coils Coil 237 257 - -
Blo15g00325 411 MobiDBLite consensus disorder prediction 15 30 - -
Blo15g00325 411 SMART finulus 237 280 IPR011598 GO:0046983
Blo15g00325 411 Pfam Helix-loop-helix DNA-binding domain 235 275 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo15g00325 - - - vvi:100262138 392.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00284 Blo-Chr1:3583985 Blo15g00325 Blo-Chr15:3768687 1.33E-09 dispersed
Blo12g00174 Blo-Chr12:11513059 Blo15g00325 Blo-Chr15:3768687 1.21E-10 dispersed
Blo12g00175 Blo-Chr12:11513999 Blo15g00325 Blo-Chr15:3768687 3.19E-08 dispersed
Blo15g00325 Blo-Chr15:3768687 Blo17g00875 Blo-Chr17:28856763 5.06E-22 dispersed
Blo15g00325 Blo-Chr15:3768687 Blo06g01223 Blo-Chr6:35838462 1.00E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13325 PF00010 HLH 1.10E-05 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo15g00325 Blo_Chr15 FPKM 13.96524 13.92498 16.864573 16.812819 29.270857 31.01363 28.400829 10.521952 9.421157 9.317526